Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq99 122 8e-25 >seq99 Length=1465915 Score = 122 bits (134), Expect = 8e-25 Identities = 345/523 (66%), Gaps = 24/523 (5%) Strand=Plus/Minus Query 683 TCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCTGACCTACCAG 742 ||||||| | ||||||| || |||| |||||| |||| |||| | ||| |||| | Sbjct 18177 TCCCTGACAGTTACACTTCAGCTTACCTCAGAAGGCCAAAAGGAATCACGGACTTACCCG 18118 Query 743 TGATCG---CCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAACGTCGCCAATC 799 || || | || || || |||||||| |||||||| || ||||||| || | || | Sbjct 18117 TGGACGTTGCACCATTTGCTTTTGCAATTCAACAACTCGGAGCTGTCAACATCACTAACC 18058 Query 800 TCACCAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGAAGAC--GACCACACCTTTGGAG 856 |||| | | | ||| |||||| || | ||| ||| ||| || | ||| Sbjct 18057 TCACTCATCCG-GCACGTTATGTCCCTGT-TCTCCCTCCGACCGGACATCAA-TACGGAC 18001 Query 857 TCCCCCTTGAACATCATTGGAACCCCAACCTGTATTCCCAAGCTGTAGACTATGCAAGAA 916 | || | | | ||||||||| | ||| | |||||||| || ||||| | || Sbjct 18000 TTCCGAATAACCGAGTTTGGAACCCTGAGGCGTACGCACAAGCTGTGGAATATGCTACAA 17941 Query 917 CTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAACCGCATGGTGGT 976 | || ||||||||||||||||| ||| || |||| || ||| | ||||||| Sbjct 17940 ACTTCGGACTCCACTTTAATGTGGTTGATCTGAACGTGAAGACCGGTACCCCCTGGTGGT 17881 Query 977 TACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCGCTACCTGAGGTAA 1036 |||| | || || | | || | |||||| || | ||| | | || || |||| Sbjct 17880 TACTGAGACAACATTTCTCTGAAGGAATGTTCGAGTTGAAGCTCCTGTTCCCGGATGTAA 17821 Query 1037 ACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCTT---------GAAGGAGAAG 1087 ||| |||||||| |||||| | || ||| | | |||||| || | |||| Sbjct 17820 ACTACACTTCTGCCATGGCTCTCACACACTCACTCTTCCTTCTCAACACAGACGACGAAG 17761 Query 1088 CTGCTGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGA---GCCGACACATACG 1144 ||||||||||||||| | ||||||||||||| ||| ||||| |||| Sbjct 17760 ACCTTGACCCATCAAACGCTATTATCGATCTCACCCCTTGTGGACAGTCCGAC---TACG 17704 Query 1145 GCTACATTCTGAGAGAGCCACACTTCGGAATCAATGTTACCAC 1187 | ||||| || | || || ||| || ||||| || ||||| Sbjct 17703 GTTACATACTACGTGACCCTCACCGTGGCATCAACGTCACCAC 17661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4642796151876