Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq41 338 7e-90 seq179 315 8e-83 >seq41 Length=1789306 Score = 338 bits (374), Expect = 7e-90 Identities = 802/1190 (67%), Gaps = 44/1190 (4%) Strand=Plus/Minus Query 376 ATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGAC 435 ||| | ||||| || || || ||||| ||||||||||| || |||||||||||||||||| Sbjct 796655 ATCGTGCACCCAACCCACGGTAGGCTTTCACACTACTATCCCTCCTGCCACATGATGGAC 796596 Query 436 TACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACT 495 ||| | | || ||||| || || || |||||||||| | ||||| || | | Sbjct 796595 TACGTAGTCCATTCTATGAACATTACGCTTTGTGATAATTTTGATTTCAAACAAGCCAAT 796536 Query 496 CCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTGC 555 || |||| ||||| ||||| ||||| ||||||| || ||||| || ||| | ||||| Sbjct 796535 CCCTACTATCACCCCTACATCCTCCGCCTCTACTGTGGTGTTCTGTTTTGGATCCAGTGT 796476 Query 556 TTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCAGCGT 615 | | |||||||| |||| | | ||| ||| | || ||| ||| | | || Sbjct 796475 CTTAGAGCTGGAAACAATGTCAATGCTCTTACTGATGTTCAATACCGGTTCCTCAACCGG 796416 Query 616 TTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTTC 675 ||| | ||| | |||| | || || | |||||||| ||||| || |||| |||||| Sbjct 796415 TTCTTGGACAACCATCCCTTGGAAACTCTCGCCATTCCCGGCCCTCTCCTCGAGCTCTTC 796356 Query 676 AAGACACTCTGCTCCTCCCAGCCAGAGTTCCCACATTATGGGAAAGTTTACCCCCGCATT 735 || || |||||||| |||||||| ||||| || ||| |||||||||| ||||| | || Sbjct 796355 AAAACTCTCTGCTCTTCCCAGCCTGAGTTTCCTCATAATGGGAAAGTATACCCTCAGATA 796296 Query 736 CCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTCTCAAAG--AACGTCC---CAAGCG 790 ||||| ||||| ||| || || | ||| ||| | || ||| ||| Sbjct 796295 CCTGCTCAACCAGGCCCAGCTCGACGCG--ATGCCTTCATGGGAAATCTCCTTGAAAG-- 796240 Query 791 CCCAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGGACT-T 849 | | ||||| || ||||| ||||| ||||| || ||| | | | ||| || | || | Sbjct 796239 -CTACTTCTTGCCTAACGTCCCTGGGATTTTAGCGCTCTTGGAAGACCTCAACCGTCTAT 796181 Query 850 TCTGAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGAG 909 | | | | | | || |||| || |||||| |||||||||||||| || || || Sbjct 796180 TTTCACAAT-ATCCTCCTGTTTATCCAAAAAGAGGCAGACACATTCCTGTTACGGAAGAT 796122 Query 910 GC---CAGTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGAT 966 || | || ||||||| |||| |||| | | | | ||||| | | || || Sbjct 796121 GCTGTCTCTACCTTCGGTCACAAGACCTTTGGTTCCCATGCTAACAGGACCGAGGCTGAA 796062 Query 967 CGTTGG---ATGGTTAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATG 1023 ||| | ||| || || ||| | ||||| || ||||||||||| ||| || Sbjct 796061 AAATGGTCACTCGTT---TCTCCTGGCTTACAGTACCCTTGTGAAGCCGATCAAAAGCTG 796005 Query 1024 AATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAG---AT 1080 ||||| ||||| |||||| | | | ||||||||||||||| | ||| || | | Sbjct 796004 AATGAGGCGTTTGCTGAATGCTACAATGATTTTGACTTTCAGG---TTACTGCTGCCACT 795948 Query 1081 GACAATCTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATC 1140 || || || | |||| || |||||||||| ||| | | ||| ||||||||| | Sbjct 795947 GATAACCTTGAAAGCATCTCCTCCTTCCTCCACTTGAAACATCGCATGACTTGGTTCACC 795888 Query 1141 CGGGCCAAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACTCTCG 1198 | || || | ||| || || | | ||| || |||| || || ||||| || | Sbjct 795887 CAGGTAAAAGGAGTTGCGGATGAT--GTTGCTGCATCCTTTGAAGGATCCGGCACCCTTG 795830 Query 1199 CCGACTGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCAC 1258 | ||||| |||| || || |||| | ||||| |||| || | | || || | Sbjct 795829 CTGACTGCCCTCCGCATGGCATGGTTGCTAACCAAGTCATGGT--CTGTCTCT-CTAAGC 795773 Query 1259 CTGAGGAGACTTTTGCTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTATCCCT 1315 | | | | || | || | || ||| | || ||| | || |||| | Sbjct 795772 C---AAAAAATCTTCCCGACCCACCAACTTGCATTGCTGATAAGCGTGCAACCTATGAGT 795716 Query 1316 TCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAG 1375 |||| | |||||| || ||||| || ||||||||| || ||| ||||||||| || | Sbjct 795715 TCAGCTACAAGCTCAAAAGCACAGCTTTCAACCTCCCTCCTCTTACGGAAGCTGTTGCTG 795656 Query 1376 CCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGG-T 1434 ||||||| |||||||| || |||| ||||| | | || || || | || || | Sbjct 795655 CCTTCTCTCAGACGCATGTCAGGATGTTTCCTAACCATCCCTTCTTTGGGACGTTCGGAT 795596 Query 1435 CAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCAC 1493 | ||| || | |||| || || || ||| ||| |||||||||||||| |||| || Sbjct 795595 CTAAA-ACTCTTG-ATCATGGTCCGTTCTGGAACAGGAGGCCCATTGGCTCTAGCCTTAC 795538 Query 1494 CGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 ||| || | |||| |||||||||||||| | || |||||| |||| ||| Sbjct 795537 CGATGATAGCTCCAACCTCACCATCCCATCGATTGTCAAGCAAGCATTCA 795488 >seq179 Length=1361229 Score = 315 bits (348), Expect = 8e-83 Identities = 801/1194 (67%), Gaps = 51/1194 (4%) Strand=Plus/Minus Query 376 ATCCTACACCCTA-CACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGA 434 ||| | ||||| | | || || ||||| | ||||||||| || ||||||||||||||||| Sbjct 603773 ATCGTGCACCCAAACCCACGGTAGGCTTTAACACTACTATCCCTCCTGCCACATGATGGA 603714 Query 435 CTACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAAC 494 |||||| | || ||||| || || || |||||||||| | ||||| || | Sbjct 603713 CTACATAGTCCATTCTATTAACATTACGCTTTGTGATAATTTTGATTTCAAACAAGCCAA 603654 Query 495 TCCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTG 554 ||| |||| ||||| ||||| ||||| ||||||| || ||||| || ||| | ||||| Sbjct 603653 TCCCTACTATCACCCCTACATACTCCGCCTCTACTGTGGTGTTCTGTTTTGGATCCAGTG 603594 Query 555 CTTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCAGCG 614 | | |||||||| ||||| | | ||| ||| | || ||| |||| | | || Sbjct 603593 TCTTAGAGCTGGAAACAATGTTAATGCTCTTACTGATGTTCAATACCGTTTCCTCAACCG 603534 Query 615 TTTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTT 674 ||| | ||| | |||| | ||| || | |||||||| ||||| || |||| ||||| Sbjct 603533 GTTCTTGGACAACCATCCCTTGGAGACTCTCGCCATTCCCGGCCCTCTCCTCGAGCTCTT 603474 Query 675 CAAGACACTCTGCTCCTCCCAGCCAGAGTTCCCACATTATGGGAAAGTTTACCCCCGCAT 734 ||| || |||||||| |||||||| ||||| || ||| |||||||||| || || | || Sbjct 603473 CAAAACTCTCTGCTCTTCCCAGCCTGAGTTTCCTCATAATGGGAAAGTATATCCTCAGAT 603414 Query 735 TCCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTCTCAAAG--AACGTCC---CAAGC 789 ||||| ||||| ||| || || | ||| ||| | || ||| ||| Sbjct 603413 ACCTGCTCAACCAGGCCCAGCTCGACGCG--ATGCCTTCATGGGAAATCTCCTTGAAAG- 603357 Query 790 GCCCAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGGACT- 848 | | ||||| || ||||| ||||| |||||||| ||| | | | ||| || | || Sbjct 603356 --CTACTTCTTGCCTAACGTCCCTGGGATTTTCGCGCTCTTGGAAGACCTCAACCGTCTA 603299 Query 849 TTCTGAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGA 908 || | | | | | || | || || |||||| |||||||||||||| || || || Sbjct 603298 TTTTCACAAT-ATCCTCCTGTCTATCCAAAAAGAGGCAGACACATTCCTGTTACGGAAGA 603240 Query 909 GGC---CAGTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGA 965 || | || ||||||| |||| |||| | | | | ||||| | | || || Sbjct 603239 TGCTGTCTCTACCTTCGGTCACAAGACCTTTGGTTCCCATGCTAACAGGACCGAGGCTGA 603180 Query 966 TCGTTGG---ATGGTTAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGAT 1022 ||| | ||| || || ||| | ||||| || ||||||||||| ||| | Sbjct 603179 AAAATGGTCACTCGTT---TCTCCTGGCTTACAGTACCCTTGTGAAGCCGATCAAAAGCT 603123 Query 1023 GAATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAG---A 1079 |||||| ||||| | |||| | | | ||||||||||||||| | ||| || | Sbjct 603122 GAATGAGGCGTTTGGTGAATGCTACAATGATTTTGACTTTCAGG---TTACTGCTGCCAC 603066 Query 1080 TGACAATCTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGT---ATGGCTTGGTT 1136 ||| || || | ||| || |||||||||| | |||| || ||| ||||||| Sbjct 603065 TGATAACCTTGAAAGAATCTCCTCCTTCCTCCACTT---GAAACGTCGCATGACTTGGTT 603009 Query 1137 CATCCGGGCCAAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACT 1194 || || || || | ||| || || | | ||| || |||| || || ||||| Sbjct 603008 CACCCAGGTAAAAGGAGTTGCGGATGAT--GTTGCTGCATCCTTTGAAGGATCCGGCACC 602951 Query 1195 CTCGCCGACTGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTCCT 1254 || || ||||| |||| || || |||| | ||||| |||| || | | || || Sbjct 602950 CTTGCTGACTGCCCTCCGCATGGCATGGTTGCTAACCAAGTCATGGT--CTGTCTCT-CT 602894 Query 1255 CCACCTGAGGAGACTTTTGCTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTAT 1311 || | | | || | || | || ||| | || ||| | || |||| Sbjct 602893 AAGCC---AAAAAATCTTCCCGACCCACCAACTTGCATGGCTGATAAGCGTGCAACCTAT 602837 Query 1312 CCCTTCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCC 1371 ||||| | |||||| || ||||| || ||||||||| || ||| ||||||||| Sbjct 602836 GAGTTCAGCTACAAGCTCAAAAGCACAGCTTTCAACCTCCCTCCTCTTACGGAAGCTGTT 602777 Query 1372 GCAGCCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTT 1431 || |||||||| |||||||| || |||| ||||| | | || || || | || Sbjct 602776 GCTGCCTTCTCTCAGACGCATGTCAGGATGTTTCCTAACCATCCCTTCTTTGGGACGTTC 602717 Query 1432 GG-TCAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCC 1489 || || ||| || | |||| || || || ||| ||| |||||||||||||| ||| Sbjct 602716 GGATCTAAA-ACTCTTG-ATCATGGTCCGTTCTGGAACAGGAGGCCCATTGGCTCTGGCC 602659 Query 1490 CCACCGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 ||||| || | |||| ||||||||||||| | | |||||| |||| ||| Sbjct 602658 TTACCGATGATAGCTCCATCCTCACCATCCCATCGCTTGTCAAGCAAGCATTCA 602605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532318777804