Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-28 >seq6 Length=16577294 Score = 132 bits (146), Expect = 4e-28 Identities = 243/353 (69%), Gaps = 11/353 (3%) Strand=Plus/Plus Query 710 CTCAAAAGGCCCAAGACCATCACGGATTTACCCGTGGT---TGCCCCATTTGCCTTTGCA 766 ||||||||||| || |||||||| |||||||| || ||| |||||||| |||||| Sbjct 15404604 CTCAAAAGGCCAAAAGGAATCACGGACTTACCCGTTGTCGCTGCACCATTTGCTTTTGCA 15404663 Query 767 ATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGAGGTATGTCCCT 826 || |||||||| || |||||||||| || || | | | | | ||||||||| Sbjct 15404664 ATTCAACAACTCGGAGCTGTCAACATCAGTAACCTATCCG--GCACGT---TATGTCCCT 15404718 Query 827 GTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTGGAACCCCAAC 886 ||| | || |||||||| | ||| |||||| | | ||||||||| | Sbjct 15404719 GTTCTCCCTCCTACCGGACATCAATACGGACTTCCGAATAACCGAGTTTGGAACCCTGAG 15404778 Query 887 CTGTATGCCCAAGCTGTAG---ACTATGCAAGAAAATTTGGTCTCCACTTTAATGTGGTA 943 ||| || |||||||| | | ||||| | ||| || || ||||||||||||||||| Sbjct 15404779 GCGTACGCACAAGCTGTTGTGGAATATGCTACAAACTTCGGACTCCACTTTAATGTGGTT 15404838 Query 944 GACTACACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTTTGAAGACGGA 1003 || | | |||| || || |||||||| | | | || ||||| || ||| Sbjct 15404839 GATCTGAACGTGAAGACCGGTACCCCCTGGTGGTTACTGAGACAACACTTCTCTGAAGGA 15404898 Query 1004 ATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGATGGC 1056 || |||||| || | ||||| | || || || |||| |||||| | ||||| Sbjct 15404899 ATGTTCGAGTTGAAGCTCCCGTTCCCGGATGTAAACTACACTTCTGCCATGGC 15404951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4623962022510