Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-21 >seq6 Length=16577294 Score = 111 bits (122), Expect = 1e-21 Identities = 402/617 (65%), Gaps = 39/617 (6%) Strand=Plus/Plus Query 619 CAATTGGCCATTGGTGCAATGCTTGCCACATACTTTAAGCTTCGCGCCCTCAT--TTACC 676 ||| | || ||||| ||| |||| || || | || | || || || || ||||| Sbjct 15404514 CAACTCGCTATTGGGGCATGTGTTGCGACTTATCTCAAATTACGTGCTCTTATAATTACC 15404573 Query 677 TAGATCTCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCTGACC 736 | || ||||||| | ||||||| || ||||||||||| |||| |||| | ||| Sbjct 15404574 GA-AT-TCCCTGACAGGTACACTTCAGCTTACCTCAAAAGGCCAAAAGGAATCACGGACT 15404631 Query 737 TACCAGTGATCGCC---CCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAACGTCG 793 |||| || |||| || || || |||||||| |||||||| || ||||||| || Sbjct 15404632 TACCCGTTGTCGCTGCACCATTTGCTTTTGCAATTCAACAACTCGGAGCTGTCAACATCA 15404691 Query 794 CCAATCTCACCAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGAAGAC--GACCACACCT 850 || || || | | ||| |||||| || | ||| || ||| || | Sbjct 15404692 GTAACCTATCCGGC------ACGTTATGTCCCTGT-TCTCCCTCCTACCGGACATCAA-T 15404743 Query 851 TTGGAGTCCCCCTTGAACATCATTGGAACCCCAACCTGTATTCCCAAGCTGTAG---ACT 907 ||| | || | | | ||||||||| | ||| | |||||||| | | | Sbjct 15404744 ACGGACTTCCGAATAACCGAGTTTGGAACCCTGAGGCGTACGCACAAGCTGTTGTGGAAT 15404803 Query 908 ATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAACCG 967 |||| | || | || ||||||||||||||||| ||| || |||| || ||| Sbjct 15404804 ATGCTACAAACTTCGGACTCCACTTTAATGTGGTTGATCTGAACGTGAAGACCGGTACCC 15404863 Query 968 CATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCGCTAC 1027 | ||||||||||| | || |||| | || | |||||| || | ||||| | | Sbjct 15404864 CCTGGTGGTTACTGAGACAACACTTCTCTGAAGGAATGTTCGAGTTGAAGCTCCCGTTCC 15404923 Query 1028 CTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCT--TGA------ 1079 | || ||||||| |||||||| ||||| | || ||| | | ||||| | | Sbjct 15404924 CGGATGTAAACTACACTTCTGCCATGGCCCTCACACACTCACTCTTCCTGCTCAACAAGA 15404983 Query 1080 --AGGAGAAGCTGCTGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGA---GCC 1134 | ||||| || ||||||||||||||| | |||||||||||||| ||| || Sbjct 15404984 CGACGAGAACCT--TGACCCATCAAACGCTATTTTCGATCTCACCCCTTGTGGACAGTCC 15405041 Query 1135 GACACATACGGCTACATTCTGAGAGAGCCACACTTCGGAATCAATGTTACCACATACCAG 1194 ||| ||||| ||||| | | || || ||| || ||||| || ||||| | | | Sbjct 15405042 GAC---TACGGTTACATATTACGTGACCCTCACCCTGGCATCAACGTCACCACGTTCATG 15405098 Query 1195 GTCATTGACGGAAGCGC 1211 |||||| | ||| || Sbjct 15405099 ACCATTGATGAAAGTGC 15405115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4643161864818