Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq3 329 4e-87 >seq3 Length=15040190 Score = 329 bits (364), Expect = 4e-87 Identities = 800/1190 (67%), Gaps = 44/1190 (4%) Strand=Plus/Minus Query 376 ATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGAC 435 ||| | ||||| || || || ||||| ||||||||||| || |||||||||||||||||| Sbjct 6469525 ATCGTGCACCCAACCCACGGTAGGCTTTCACACTACTATCCCTCCTGCCACATGATGGAC 6469466 Query 436 TACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACT 495 ||| | | || ||||| || || || |||||||||| | ||||| || | | Sbjct 6469465 TACGTAGTCCATTCTATGAACATTACGCTTTGTGATAATTTTGATTTCAAACAAGCCAAT 6469406 Query 496 CCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTGC 555 || |||| ||||| ||||| ||||| ||||||| || ||||| || ||| | ||||| Sbjct 6469405 CCCTACTATCACCCCTACATCCTCCGCCTCTACTGTGGTGTTCTGTTTTGGATCCAGTGT 6469346 Query 556 TTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCAGCGT 615 | | |||||||| |||| | | ||| ||| | || ||| ||| | | || Sbjct 6469345 CTTAGAGCTGGAAACAATGTCAATGCTCTTACTGATGTTCAATACCGGTTCCTCAACCGG 6469286 Query 616 TTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTTC 675 ||| | || | |||| | || || | |||||||| ||||| || |||| |||||| Sbjct 6469285 TTCTTGAACAACCATCCCTTGGAAACTCTCGCCATTCCCGGCCCTCTCCTCGAGCTCTTC 6469226 Query 676 AAGACACTCTGCTCCTCCCAGCCAGAGTTCCCACATTATGGGAAAGTTTACCCCCGCATT 735 || || |||||||| |||||||| ||||| || ||| |||||||||| ||||| | || Sbjct 6469225 AAAACTCTCTGCTCTTCCCAGCCTGAGTTTCCTCATAATGGGAAAGTATACCCTCAGATA 6469166 Query 736 CCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTCTCAAAG--AACGTCC---CAAGCG 790 ||||| ||||| ||| || || | ||| ||| | || ||| ||| Sbjct 6469165 CCTGCTCAACCAGGCCCAGCTCGACGCG--ATGCCTTCATGGGAAATCTCCTTGAAAG-- 6469110 Query 791 CCCAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGGACT-T 849 | | ||||| || ||||| ||||| |||||||| ||| | | | ||| || | || | Sbjct 6469109 -CTACTTCTTGCCTAACGTCCCTGGGATTTTCGCGCTCTTGGAAGACCTCAACCGTCTAT 6469051 Query 850 TCTGAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGAG 909 | | | | | | || | || || |||||| |||||||||||||| || || || Sbjct 6469050 TTTCACAAT-ATCCTCCTGTCTATCCAAAAAGAGGCAGACACATTCCTGTAACGGAAGAT 6468992 Query 910 GC---CAGTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGAT 966 || | || ||||||| |||| |||| | | | | ||||| | | || || Sbjct 6468991 GCTGTCTCTACCTTCGGTCACAAGACCTTTGGTTCCCATGCTAACAGGACCGAGGCTGAA 6468932 Query 967 CGTTGG---ATGGTTAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATG 1023 ||| | ||| || || ||| | ||||| || ||||||||||| ||| || Sbjct 6468931 AAATGGTCACTCGTT---TCTCCTGGCTTACAGTACCCTTGTGAAGCCGATCAAAAGCTG 6468875 Query 1024 AATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAG---AT 1080 ||||| ||||| |||||| | | | ||||||||||||||| | ||| || | | Sbjct 6468874 AATGAGGCGTTTGCTGAATGCTACAATGATTTTGACTTTCAGG---TTACTGCTGCCACT 6468818 Query 1081 GACAATCTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATC 1140 || || || | |||| || |||||||||| ||| | | ||| ||||||||| | Sbjct 6468817 GATAACCTTGAAAGCATCTCCTCCTTCCTCCACTTGAAACATCGCATGACTTGGTTCACC 6468758 Query 1141 CGGGCCAAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACTCTCG 1198 | || || | ||| || || | | ||| || |||| || || ||||| || | Sbjct 6468757 CAGGTAAAAGGAGTTGCGGATGAT--GTTGCTGCATCCTTTGAAGGATCCGGCACCCTTG 6468700 Query 1199 CCGACTGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCAC 1258 | ||||| |||| || || |||| | ||||| |||| || | | || || | Sbjct 6468699 CTGACTGCCCTCCGCATGGCTTGGTTGCTAACCAAGTCATGGT--CTGTCTCT-CTAAGC 6468643 Query 1259 CTGAGGAGACTTTTGCTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTATCCCT 1315 | | | | || | || | || ||| | || ||| | || |||| | Sbjct 6468642 C---AAAAAATCTTCCCGACCCACCAACTTGCATTGCTGATAAGCGTGCAACCTATGAGT 6468586 Query 1316 TCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAG 1375 |||| | |||||| || ||||| || ||||||| | || ||| ||||||||| || | Sbjct 6468585 TCAGCTACAAGCTCAAAAGCACAGCTTTCAACCTCTCTCCTCTTACGGAAGCTGTTGCTG 6468526 Query 1376 CCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGG-T 1434 ||||||| |||||||| || |||| ||||| | | || || || | || || | Sbjct 6468525 CCTTCTCTCAGACGCATGTCAGGATGTTTCCTAACCATCCCTTCTTTGGGACGTTCGGAT 6468466 Query 1435 CAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCAC 1493 | ||| || | |||| || || || ||| ||| |||||||||||||| |||| || Sbjct 6468465 CTAAA-ACTCTTG-ATCATGGTCCGTTCTGGAACAGGAGGCCCATTGGCTCTAGCCTTAC 6468408 Query 1494 CGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 ||| || | |||| |||||||||||||| | || |||||| |||| ||| Sbjct 6468407 CGATGATAGCTCCAACCTCACCATCCCATCGATTGTCAAGCAAGCATTCA 6468358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532754558422