Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_013110.1 Length=2344 Score E Sequences producing significant alignments: (Bits) Value seq9302 131 2e-27 >seq9302 Length=7386 Score = 131 bits (144), Expect = 2e-27 Identities = 179/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1459 GTTCTCGTCCTCGATACTGATGGTGAATTAACCATCT-CTGCTCA-CTTGCCACTCCTTG 1516 || || || || |||||||||||||| || || ||| | ||| | |||||||| | || Sbjct 5530 GTGCTTGTGCTAGATACTGATGGTGACTTGACG-TCTACCGCTTATCTTGCCACACTTT- 5473 Query 1517 CTGGCAAAATTATTGAATCTTTCGAAATTGATGGTTCTACCATCGAAATGCCGAATGTTG 1576 ||||||| || |||||||| || || | ||||| | || ||||||||||| ||| ||| Sbjct 5472 CTGGCAAGATAATTGAATCATTTGAGCTAGATGGCACCACAATCGAAATGCCCAATATTG 5413 Query 1577 ATAAGTCTCTCGGCCTACAAAACTGTCTGTTTGCTGACTCTGCTGTTAGTTATAGACTAG 1636 | ||| |||| | ||||||| |||||||||| ||||| || |||| | | Sbjct 5412 ACAAGCCTCTATGTTTACAAAATACCATGTTTGCTGATTCTGCCATTCCTTATGGTTATG 5353 Query 1637 TCCGCCCTGGCTCCGCTTTTCACCCGCAACCCGCTGGATCAATAAACCCCCCTCTTAATC 1696 | ||||||||||| || || ||||| | ||||| ||||| ||| ||| | |||| Sbjct 5352 TACGCCCTGGCTCTCATTATCGTCCGCATACTGCTGGTTCAATTCTCCCACCTTTCAATC 5293 Query 1697 GAGTT 1701 ||||| Sbjct 5292 GAGTT 5288 Score = 131 bits (144), Expect = 2e-27 Identities = 369/561 (66%), Gaps = 13/561 (2%) Strand=Plus/Minus Query 246 ATGGACTATTGATGTCTTTCCAAACATGGTTCCTATTACTATGTATATCATGCTCACCTC 305 ||||| ||| ||||| ||||| | |||||| || || ||| || |||||||| | | Sbjct 6604 ATGGATTATCGATGTGTTTCCGAGCATGGTCCCAATCGTTATCTACATCATGCTTTCTGC 6545 Query 306 AATTGCTCACGCCAATGATGTTGACCACCGCACTACCTCCAAAGTGTCCGTTGCAACTAT 365 || | ||| | || | ||||| |||||| | |||| ||| | ||| ||||| Sbjct 6544 TATCGATCAATCTAACAAAGTTGATCACCGCGGCCTTTGCAAATCGTCTGCTGCTACTAT 6485 Query 366 TTGCATGTACCATCTCTCCATCGTCTACGGTTATTTCCTTCTCAATGACATGATTACTCG 425 |||||| ||||| || | ||||||| || || || || |||| | ||| ||| | Sbjct 6484 TTGCATATACCACCTTAGCGTCGTCTATGGCTACTTTCTCATCAACG--ATG-TTA-GAG 6429 Query 426 TGCCTCC----GCTTCTGCTCATGCCCGCCCCTGGATTGAAACTTCCTGGAAACGCGAAT 481 ||| ||| |||||||||| || || | ||| |||||| ||||| | || | Sbjct 6428 TGCGTCCTACTCCTTCTGCTCACGCTCGATCTTGGCAACAAACTTTTTGGAAGAGAGATT 6369 Query 482 TCGCCGACTTTTTGCTCACACTCCCCGTCCCTGAGTTTCTTACGCCTTTCCTTTCTCAAT 541 | | | || | || || | || ||||| |||||| || |||| |||| Sbjct 6368 TTATCAAGGTTCTTTCAACCCTTTCGGTTCCTGACTTTCTTGTTCCAATCCTCAACCAAT 6309 Query 542 TCCAACACTTTACTACTGATCGTACTAAGAATGTCTTCCTTACACCTTCTGCTGCTGGCT 601 |||| ||| |||| || || || || | | | || | | || |||||| |||| Sbjct 6308 TCCATGCTTTTTCTACGGAACGCACAAAAAGTCTATTTTTCATTCCAAGTGCTGCCGGCT 6249 Query 602 TTGACCATAATATATTCTTTGGCCGTGTCTTTCCTCTCAACATGTTTTCTGCAATCCATG 661 ||| ||| || ||| || || ||||| || ||| | || |||||| | || | |||| Sbjct 6248 ATGATCATGATCAATTTTTCGGACGTGTTTTCCCTTTGAATATGTTTGCAGCTGTTCATG 6189 Query 662 ATTGCACCGCTACCCTGCCTGGTAATACTCCACGCATCCAA--GTTTTACAAGACTTATA 719 | ||||| ||||| || |||| || || | | || ||| | | || || || Sbjct 6188 ACTGCACGGCTACTCTTTTTGGTGATGTGCC---CGTGAAACTGTTCTTCGTGAGTTGTA 6132 Query 720 TAGTCGTGTTCTGTATACAATTACTGCTCCTGGCTTCACTTGCTTAATCCCTGATTTAAT 779 ||| || || || || || ||||| || ||| || | |||||||||||||| Sbjct 6131 CTCTCGGTCACTTTACACTATCGGTGATCCTGCCTACACCTGTGTCATCCCTGATTTAAT 6072 Query 780 TGGTGTCACAATCGATCAAAC 800 || || ||||||||||||| Sbjct 6071 AGGCGTTTCAATCGATCAAAC 6051 Score = 120 bits (132), Expect = 4e-24 Identities = 141/187 (75%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 1950 CCTCTGGTCTCCATACTCTTACACTCCGTTTGAG---AATGACTACTTTCCAGAC-CCAG 2005 ||| |||||||||||| ||| |||| ||| || | || ||| ||| ||| |||| Sbjct 5081 CCTATGGTCTCCATACACTTGCACTTCGTACGAATCAAGTGGCTA---TCC-GACTCCAG 5026 Query 2006 ACCTCGCTGAATCAAGGCACTACTTCTTGTCCAATCTGCGTACCATTTTTGGTACTGACT 2065 ||||| | ||||||||||||| | | ||||||| || ||| | ||||||||||| | Sbjct 5025 ACCTCTCGACTTCAAGGCACTACTACCTTACCAATCTTCGAACCCTGTTTGGTACTGATT 4966 Query 2066 ACAATCTTGTTCAAGCCAAGCACCCTTATGAAGCTCTCCCTGTTGTTTAGGCTGATTCTC 2125 ||||| | ||| | | ||||||||||||||||||| | ||| ||| ||||| |||| Sbjct 4965 ACAATTTGGTTGAGGTCAAGCACCCTTATGAAGCTATGCCTATTGCCTAGGCCATTTCTA 4906 Query 2126 TCTTTTT 2132 || |||| Sbjct 4905 TCATTTT 4899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7390423309500