Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021095.1 Length=2348 Score E Sequences producing significant alignments: (Bits) Value seq9302 98.7 1e-17 >seq9302 Length=7386 Score = 98.7 bits (108), Expect = 1e-17 Identities = 135/185 (73%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 1517 GGTAAGGTAATTGAGTCTTTTGAACTCGATGGCTCTACAATCGCAATGCCTGATGCTAGA 1576 || ||| ||||||| || ||||| || |||||| | ||||||| |||||| || | || Sbjct 5470 GGCAAGATAATTGAATCATTTGAGCTAGATGGCACCACAATCGAAATGCCCAATATT-GA 5412 Query 1577 AAATCACTTGCCATG----CAAAACTGCATGTTTGCTGACTCTGCCATTGCTTACAAGTA 1632 || | || | ||| ||||| |||||||||||| ||||||||| |||| || Sbjct 5411 CAAGC-CT--CTATGTTTACAAAATACCATGTTTGCTGATTCTGCCATTCCTTATGGTTA 5355 Query 1633 TGTTCGTCCTGGATCCTACTGGCGCCCTCGTGCTGCTGGTTCCATCCTGCCACCTCTTAA 1692 ||| || ||||| || | | || || | | |||||||||| || || |||||| | || Sbjct 5354 TGTACGCCCTGGCTCTCATTATCGTCCGCATACTGCTGGTTCAATTCTCCCACCTTTCAA 5295 Query 1693 TCGAG 1697 ||||| Sbjct 5294 TCGAG 5290 Score = 95.1 bits (104), Expect = 2e-16 Identities = 171/245 (70%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 1925 GGTATGGCTGAAGGCCATTTGATGATCTGGTCCCCATACACTTACAATCCGTATGAGTCT 1984 || |||| |||||| | ||||| | ||||| |||||||||| || | |||| || || Sbjct 5104 GGAATGGATGAAGGTAACTTGATCCTATGGTCTCCATACACTTGCACTTCGTACGAATCA 5045 Query 1985 GATGATTATCC---TCCCGTCGCCCTTGATGCGTCTAGACACTACTACCTGACTAATCTG 2041 || ||||| ||| | | | || || | || || ||||||||||| || ||||| Sbjct 5044 AGTGGCTATCCGACTCCAGAC-CTCTCGA--CTTCAAGGCACTACTACCTTACCAATCTT 4988 Query 2042 CGTACCATTTTTGGTACTGACTACAATCTTGTTAGTGTCAAACACATCTATGAATCCTAC 2101 || ||| | ||||||||||| |||||| | ||| ||||| ||| |||||| | Sbjct 4987 CGAACCCTGTTTGGTACTGATTACAATTTGGTTGAGGTCAAGCACCCTTATGAAGCTATG 4928 Query 2102 CCCGCTGTCTAAGTGATTACTCTCCTTTTCTTTTAATTAAAGTTTAAAAGTTTTTGATGT 2161 || || ||| | ||| || || |||| | | ||||| | | |||||||||| || Sbjct 4927 CCTATTGCCTAGGCCATTTCTATCATTTT-TCCTTATTAA--TATCTAAGTTTTTGAAGT 4871 Query 2162 TTAAT 2166 || || Sbjct 4870 TTGAT 4866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7403220579300