Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021097.1 Length=2353 Score E Sequences producing significant alignments: (Bits) Value seq9302 113 7e-22 >seq9302 Length=7386 Score = 113 bits (124), Expect = 7e-22 Identities = 213/310 (69%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 1861 CAGTCTTTTCTTGGATTTCGCACTGTTGATAGTTCTGCCAATGAAGCTGCCCTTGATGCT 1920 ||||||||||| ||||| |||||| || | ||| ||||| | | ||||||| | Sbjct 5170 CAGTCTTTTCTCGGATTCAAAACTGTTAATGGGTCTAACAATGCGGATAATCTTGATGAT 5111 Query 1921 GTCCCTGGAATGAATGAAAGCTTGCTGATGATCTGGTCCCCATATACCTACAACCCATAT 1980 || ||||||||| ||||| | |||| | ||||| ||||| || | || | || Sbjct 5110 GTTCCTGGAATGGATGAAGGTAACTTGATCCTATGGTCTCCATACACTTGCACTTCGTAC 5051 Query 1981 GAGTCTGATGATTATCCTGCTCTTG--CTTATGATGCCTCTAGGCATTATTACTTGACCA 2038 || || || ||||| ||| | || || | || ||||| || ||| | |||| Sbjct 5050 GAATCAAGTGGCTATCCGACTCCAGACCTCTCGA--CTTCAAGGCACTACTACCTTACCA 4993 Query 2039 ACCTCCGTACCATCTTTGGTACTGATTACAATTTGGTTGCCACCAAGCACATTTATGAGT 2098 | || || ||| | ||||||||||||||||||||||||| ||||||| |||||| Sbjct 4992 ATCTTCGAACCCTGTTTGGTACTGATTACAATTTGGTTGAGGTCAAGCACCCTTATGAAG 4933 Query 2099 CCTTCCCCGCTGTTTAAGCAATTACTCTC--TTTTCCTTTTAATTAAGTTAAAAGTCTTT 2156 | | || || || || ||| || || |||||||| ||||| | |||| ||| Sbjct 4932 CTATGCCTATTGCCTAGGCCATTTCTATCATTTTTCCTT---ATTAATATCTAAGTTTTT 4876 Query 2157 GATGTTTAAT 2166 || |||| || Sbjct 4875 GAAGTTTGAT 4866 Score = 107 bits (118), Expect = 3e-20 Identities = 225/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 346 AAGTCATCTGCTTACACTTTGTGTATGTACTATATGACTGTCGTCTATGGCTACTTCTTG 405 || || |||||| ||| | || || ||| | | | ||||||||||||||||| | Sbjct 6504 AAATCGTCTGCTGCTACTATTTGCATATACCACCTTAGCGTCGTCTATGGCTACTTTCTC 6445 Query 406 CTCAATGATCTACACACT-CGTCCTACCCGGTCTGTTCATGCCCGTGTTTGGGTTGAATC 464 |||| ||| | | | | |||||||| | |||| ||| || || |||| || | Sbjct 6444 ATCAACGATGTT-AGAGTGCGTCCTACTCCTTCTGCTCACGCTCGATCTTGGCAACAAAC 6386 Query 465 ATCCTGGAGATCTGATTTTGTTAAGTTCCTGACTACCCTTCCTGTCCCTGAATTTCTCAA 524 | |||| |||||| | ||| | || | |||||| | || ||||| ||||| Sbjct 6385 TTTTTGGAAGAGAGATTTTATCAAGGTTCTTTCAACCCTTTCGGTTCCTGACTTTCTTGT 6326 Query 525 GCCAATCTTGTCCCAATTTCATCCATTTAACACAGACAGAACTAAAAATGTGTTCTTTAG 584 |||||| | |||||| ||| | ||| || || | || |||| | | || || | Sbjct 6325 TCCAATCCTCAACCAATTCCATGCTTTTTCTACGGAACGCACAAAAAGTCTATTTTTCAT 6266 Query 585 CCCCTCTGCTGCTGGATTTGATCATGACCAATTCTTTGGCCGTATCTTTCCTATGAATAT 644 || |||||| || | ||||||||| ||||| || || ||| | || ||| ||||||| Sbjct 6265 TCCAAGTGCTGCCGGCTATGATCATGATCAATTTTTCGGACGTGTTTTCCCTTTGAATAT 6206 Query 645 GTTTGCTGCATTCCACGATTGTACTGCTACACT 677 |||||| || | || || || || ||||| || Sbjct 6205 GTTTGCAGCTGTTCATGACTGCACGGCTACTCT 6173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7419217166550