Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021099.1 Length=2349 Score E Sequences producing significant alignments: (Bits) Value seq9302 170 3e-39 >seq9302 Length=7386 Score = 170 bits (188), Expect = 3e-39 Identities = 287/405 (71%), Gaps = 19/405 (5%) Strand=Plus/Minus Query 1858 CAATCTTTCCTTGGATTCCGCACAGTTGATAGTTCCAATAATGCTGCAAACCTCGATGCT 1917 || ||||| || |||||| || ||| || | || || ||||| | || || |||| | Sbjct 5170 CAGTCTTTTCTCGGATTCAAAACTGTTAATGGGTCTAACAATGCGGATAATCTTGATGAT 5111 Query 1918 GTCCCCGGGATGACTGAAGGTCTTCTGATGCTCTGGTCTCCCTACACATACACTCCGTAT 1977 || || || ||| ||||||| |||| || |||||||| ||||| | |||| |||| Sbjct 5110 GTTCCTGGAATGGATGAAGGTAACTTGATCCTATGGTCTCCATACACTTGCACTTCGTAC 5051 Query 1978 GAGTCTGGTGATTATCC-ATTCGCTGATCTCAGTGCTTCTAGGCACTATTATCTGACCAA 2036 || || ||| ||||| | || | || ||| |||| |||||||| || || ||||| Sbjct 5050 GAATCAAGTGGCTATCCGACTC-CAGACCTCTCGACTTCAAGGCACTACTACCTTACCAA 4992 Query 2037 CCTCCGTACCATCTTTGGTACTGACTACAACTTGGTTTCAGTTAAGCATCCCTATGAAGC 2096 || || ||| | ||||||||||| ||||| |||||| || ||||| || |||||||| Sbjct 4991 TCTTCGAACCCTGTTTGGTACTGATTACAATTTGGTTGAGGTCAAGCACCCTTATGAAGC 4932 Query 2097 TTTCCCTGTCGTTTAAGCAATTACTCTC---TTTCCT--TTAATGCAATTTAAAGTTTTT 2151 | | ||| | | || || ||| || || |||||| ||||| || | |||||||| Sbjct 4931 TATGCCTATTGCCTAGGCCATTTCTATCATTTTTCCTTATTAAT---ATCT-AAGTTTTT 4876 Query 2152 GATGTTTAATTGGTTTCCTTTAATGACAATCGCGTGTATACTACGCGgttcttttgtttc 2211 || |||| | || |||| | | | || | || | || ||| ||||||| Sbjct 4875 GAAGTTTGA-TGATTTCGATCCCTTATTATATCTGGTTTTCT----TGTT-TTTTGTT-- 4824 Query 2212 gtttttcttctgaactttttagttcagcgttttcaacgttgtttt 2256 | ||||| |||||||||| || || || |||||||||||||||| Sbjct 4823 GAGTTTCTACTGAACTTTTAAGGTCTGCCTTTTCAACGTTGTTTT 4779 Score = 96.9 bits (106), Expect = 5e-17 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 1514 CTGGAAAAATAATCGAGTCATTTGAACTCGATGGTTCCACAATCGAAATGCCTGATGTAA 1573 |||| || ||||| || |||||||| || ||||| |||||||||||||||| || | Sbjct 5472 CTGGCAAGATAATTGAATCATTTGAGCTAGATGGCACCACAATCGAAATGCCCAATATTG 5413 Query 1574 GGAAATCACTCGGCATGCAAAACTGCATGTTCGCTGACTCTGCCGTCGCATATAAATATG 1633 || | || | | ||||| |||||| ||||| |||||| | | ||| |||| Sbjct 5412 ACAAGCCTCTATGTTTACAAAATACCATGTTTGCTGATTCTGCCATTCCTTATGGTTATG 5353 Query 1634 TGCGCCCTGGCTCCTACTGGCACCCTCGCGCCGCTGGATCTACTCTTCCTCCACTGAATC 1693 | ||||||||||| | | | || | | ||||| || | ||| || || | |||| Sbjct 5352 TACGCCCTGGCTCTCATTATCGTCCGCATACTGCTGGTTCAATTCTCCCACCTTTCAATC 5293 Query 1694 GAGCTCCACCCAATTCTCGTCCCCGTCTCCCGGCTTCGTCTCTGCTCCATGATAGAAC 1751 ||| | ||| | ||| | || |||||||| || || || |||| |||| || || Sbjct 5292 GAGTTAAACCAGAATCTAGACCTCGTCTCCCCGCCTCTTCAATGCTGTATGACAGGAC 5235 Score = 96.9 bits (106), Expect = 5e-17 Identities = 343/529 (65%), Gaps = 8/529 (2%) Strand=Plus/Minus Query 496 ACACTTCCCGTGCCTGAATTTCTGCTTCCCATCCTTGCTCAGTTCCACCCATTCAATACC 555 || ||| | || ||||| ||||| |||| ||||| || ||||| | || ||| Sbjct 6351 ACCCTTTCGGTTCCTGACTTTCTTGTTCCAATCCTCAACCAATTCCATGCTTTTTCTACG 6292 Query 556 GACAGGACTAAGAATGTTTTCTTTAGTCCCTCCGCTGCTGGATTTGACCATGACCAATTC 615 || | || || | | | || || | ||| ||||| || | ||| ||||| ||||| Sbjct 6291 GAACGCACAAAAAGTCTATTTTTCATTCCAAGTGCTGCCGGCTATGATCATGATCAATTT 6232 Query 616 TTTGGCCGTGTCTATCCTTTGAACATGTTTGCTGTAATCCATGACTGCACTGCTACCCTC 675 || || ||||| | |||||||| |||||||| | | ||||||||||| ||||| || Sbjct 6231 TTCGGACGTGTTTTCCCTTTGAATATGTTTGCAGCTGTTCATGACTGCACGGCTACTCTT 6172 Query 676 CCTGGTAAT-TCTACCAGAACCCAAGTCCTACAAGACCTTTTCTCAAAGGTC-CTATACA 733 |||| || | | ||| | || || | || | | ||| |||| || |||| Sbjct 6171 TTTGGTGATGTGCCCGTGAAAC--TGTTCTTCGTGAGTTGTACTC-TCGGTCACTTTACA 6115 Query 734 CTGTTAACGCCCCTGGTTTCACTTGTCTGATTCCTGATCTATTTGGTCTTACCCTCGATC 793 || | | |||| | ||| ||| | || |||||| || | || || | |||||| Sbjct 6114 CTATCGGTGATCCTGCCTACACCTGTGTCATCCCTGATTTAATAGGCGTTTCAATCGATC 6055 Query 794 AAACAGTTAACACCACTGTTAATTACATGAATTCCAGACTTTACCAAGTCTTTTCA--TC 851 |||| | | ||||| |||||||||| | || | || || | |||||| || Sbjct 6054 AAACGAATGAAACCACCCAAAATTACATGAGCTACAAAATTGTTCAGTTGTTTTCAACTC 5995 Query 852 ACTGTTTAATCCCGTGTTATTCCGCG-ACTCTCAGCGCCGCTCATCCCTTGCTGCACTCT 910 |||| |||| || | | || | ||| | |||| ||| | | | | ||| | | Sbjct 5994 TGTGTTCAATCAAGTCCTGTATCGTGTACTTTGAGCGTCGCACCACAATAGTTGCCATGT 5935 Query 911 CTTTCACCCCGCCTACATATACAACCAATCATATTAATGCATATGACTACATGTTTGCTG 970 | ||| | ||| ||| | |||| || | ||||| ||||| |||||||||| Sbjct 5934 CACTCAGTTCCCCTGCATTTCCAACATATGCGGTCAATGCTTATGATATGATGTTTGCTG 5875 Query 971 CCTATCCTGCAAATCTCCGTGAATTGCAAGTTGTCCTCCAATCCGTCTC 1019 || ||| | || || | ||| | | |||||| | ||||||||||| Sbjct 5874 CCACTCCATCCAACCTTCACGAACTAGAGGTTGTCTTTCAATCCGTCTC 5826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7406419896750