Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_021148.1 Length=2354 Score E Sequences producing significant alignments: (Bits) Value seq9302 187 4e-44 >seq9302 Length=7386 Score = 187 bits (206), Expect = 4e-44 Identities = 302/429 (70%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 249 TGGACAATCGATGTTTTCCCAAACATGACTCCAATCATGATGTACACTATGCTGATGTCC 308 |||| |||||||| || || | |||| |||||| | || |||| ||||| | | | Sbjct 6603 TGGATTATCGATGTGTTTCCGAGCATGGTCCCAATCGTTATCTACATCATGCTT-TCTGC 6545 Query 309 ATTCGA-CATGCCAATGCTACTCAACAGCGCGAACATTCCAAAGCTTCCGTTGCTACTAT 367 |||| || | || | | || |||| | || |||| | || | ||||||||| Sbjct 6544 TATCGATCAATCTAACAAAGTTGATCACCGCGGCCTTTGCAAATCGTCTGCTGCTACTAT 6485 Query 368 CTGCATGCATCACATGGCCGTTATCTATGGCTTCTTCCTCGTCAATGACCTTCATGTCCG 427 ||||| | ||| | ||| ||||||||| ||| ||| |||| || || || || Sbjct 6484 TTGCATATACCACCTTAGCGTCGTCTATGGCTACTTTCTCATCAACGATGTTAGAGTGCG 6425 Query 428 TCCTGCTCCGTCTGCTCACGCCCGCTCTTGGGCTGAAACCTCCTGGAA-AGATGACTTTG 486 |||| |||| ||||||||||| || |||||| |||| | ||||| ||| || ||| Sbjct 6424 TCCTACTCCTTCTGCTCACGCTCGATCTTGGCAACAAACTTTTTGGAAGAGA-GATTTTA 6366 Query 487 TCAATTTTCTTATGAACGTCCCTGTTCCCGAGTTTCTGACTACCATTCTCTCCCAGTTCC 546 |||| ||||| | | | | ||||| || ||||| | | || ||| ||| |||| Sbjct 6365 TCAAGGTTCTTTCAACCCTTTCGGTTCCTGACTTTCTTGTTCCAATCCTCAACCAATTCC 6306 Query 547 ATGCCTTTGAAACTGACAGAACAAAGAATGTTTTCTTTGTTCCATCTGCTGCTGGTTATG 606 |||| ||| || || | ||||| | | | || || ||||| |||||| || |||| Sbjct 6305 ATGCTTTTTCTACGGAACGCACAAAAAGTCTATTTTTCATTCCAAGTGCTGCCGGCTATG 6246 Query 607 ATCACGACCAATTCTTTGGACGTGTTTACCCTCTGAATATGTTTGCAACAATCCATGACT 666 |||| || ||||| || |||||||||| |||| |||||||||||||| | | ||||||| Sbjct 6245 ATCATGATCAATTTTTCGGACGTGTTTTCCCTTTGAATATGTTTGCAGCTGTTCATGACT 6186 Query 667 GCACTGCTA 675 |||| |||| Sbjct 6185 GCACGGCTA 6177 Score = 161 bits (178), Expect = 1e-36 Identities = 209/286 (73%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 1467 GTGCTCGATACTGATGGTGACCTTACTGTC-ACTGCTCATCTGCCCCTACTTGCTGGAAA 1525 ||||| ||||||||||||||| | || ||| || ||| |||| || |||| |||| || Sbjct 5524 GTGCTAGATACTGATGGTGACTTGAC-GTCTACCGCTTATCTTGCCACACTTTCTGGCAA 5466 Query 1526 GATTATTGAATCTTTCGAAATTGATGGTACAACAATTGAAATGCCCAACACTTTCAAGTC 1585 ||| |||||||| || || | ||||| || ||||| ||||||||||| | | |||| | Sbjct 5465 GATAATTGAATCATTTGAGCTAGATGGCACCACAATCGAAATGCCCAATATTGACAAGCC 5406 Query 1586 TCTAGGCATGCAAAACTGCATGTTTGCTGATTCTGCCATCCCTTACAAGTATGTCCTGCC 1645 |||| | | ||||| ||||||||||||||||||||| ||||| ||||| | || Sbjct 5405 TCTATGTTTACAAAATACCATGTTTGCTGATTCTGCCATTCCTTATGGTTATGTACGCCC 5346 Query 1646 CGGATCCTACTATCATCCTCGCACTACTGGCACTGTTCTCCCTCCCTTGAACCGAGCTCC 1705 || || | |||| ||| | ||| |||| | ||||||| || || || |||| | Sbjct 5345 TGGCTCTCATTATCGTCCGCATACTGCTGGTTCAATTCTCCCACCTTTCAATCGAGTTAA 5286 Query 1706 CCCGAACTCCAAGCCTCGTCTGCCCGCATCTACCTTGCTCCATGAC 1751 || | || | |||||||| ||||| ||| | |||| ||||| Sbjct 5285 ACCAGAATCTAGACCTCGTCTCCCCGCCTCTTCAATGCTGTATGAC 5240 Score = 134 bits (148), Expect = 2e-28 Identities = 214/306 (70%), Gaps = 1/306 (0%) Strand=Plus/Minus Query 1862 TCAGTCCTTTTTAGGATTTAGAACTGTTGATGCCTCCTCCAATGCTGCTACTCTTGATGC 1921 |||||| ||| | ||||| | ||||||| ||| || |||||| | || |||||||| Sbjct 5171 TCAGTCTTTTCTCGGATTCAAAACTGTTAATGGGTCTAACAATGCGGATAATCTTGATGA 5112 Query 1922 TGTCCCGTCGATGCCCACTGATCGCCTAATGGTTTGGTCTCCCTACACATACACCCCATA 1981 ||| || ||| | | | | || | |||||||| ||||| | ||| | || Sbjct 5111 TGTTCCTGGAATGGATGAAGGTAACTTGATCCTATGGTCTCCATACACTTGCACTTCGTA 5052 Query 1982 TGAACCTGATGACTATCCCATTCCTGATCTTGGCGCTTCAAGGCACTACTATTTGACCAA 2041 ||| | || |||||| | ||| || || |||||||||||||||| | ||||| Sbjct 5051 CGAATCAAGTGGCTATCCGACTCCAGACCTCTCGACTTCAAGGCACTACTACCTTACCAA 4992 Query 2042 TCTTCGTACCATTTTCGGTACTGACTACAACCTTGTTCAAACCAAGCACCCTTATGAAGC 2101 |||||| ||| | || |||||||| ||||| | ||| | |||||||||||||||||| Sbjct 4991 TCTTCGAACCCTGTTTGGTACTGATTACAATTTGGTTGAGGTCAAGCACCCTTATGAAGC 4932 Query 2102 TCTCCCCGTCGTGTAAGCAATTACTCTCA-TCCCCCTTATTTAAGTATAAGTTTATGATG 2160 | | || | | || || ||| || ||| | ||||||| | | ||||||| ||| | Sbjct 4931 TATGCCTATTGCCTAGGCCATTTCTATCATTTTTCCTTATTAATATCTAAGTTTTTGAAG 4872 Query 2161 TTTAAT 2166 ||| || Sbjct 4871 TTTGAT 4866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7422416484000