Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_031130.1 Length=2266 Score E Sequences producing significant alignments: (Bits) Value seq9302 210 3e-51 >seq9302 Length=7386 Score = 210 bits (232), Expect = 3e-51 Identities = 666/1018 (65%), Gaps = 36/1018 (4%) Strand=Plus/Minus Query 245 ATGGATTATTGATGTTTTCCCAAACTTCACTCCCATCCTGATGTACATTATGCTCAATGC 304 ||||||||| ||||| || || | | | || ||| | || ||||| ||||| ||| Sbjct 6604 ATGGATTATCGATGTGTTTCCGAGCATGGTCCCAATCGTTATCTACATCATGCTTTCTGC 6545 Query 305 GATTCGCCACGCGAACGCCACTGCTCAACGTGAACATTCCAAGTCATCTGTTGCCACCAT 364 || || | ||| || ||| || | | || ||| || |||| ||| || || Sbjct 6544 TATCGATCAATCTAACAAAGTTGATCACCGCGGCCTTTGCAAATCGTCTGCTGCTACTAT 6485 Query 365 TTGCATGTATCATCTGTCCATTGTCTATGGATTTTTCCTCATCAATGACCTCAATGTCCG 424 |||||| || || || | | |||||||| | || |||||||| || | | || || Sbjct 6484 TTGCATATACCACCTTAGCGTCGTCTATGGCTACTTTCTCATCAACGATGTTAGAGTGCG 6425 Query 425 TCCTGCTCCGTCTGCTCATGCCCGTATCTGGGCCGAATCCAACT----GGAGATCTGAAT 480 |||| |||| |||||||| || || |||| ||| | | |||| ||| || | Sbjct 6424 TCCTACTCCTTCTGCTCACGCTCG-ATCTTGGC---AACAAACTTTTTGGAAGAGAGATT 6369 Query 481 TTGTGAAATTTCTGTCCACCCTGCCTGTACCTGAGTTCCTTATTCCCATCCTATCCCAGT 540 || | || |||| || ||||| | || ||||| || ||| |||| ||||| ||| | Sbjct 6368 TTATCAAGGTTCTTTCAACCCTTTCGGTTCCTGACTTTCTTGTTCCAATCCTCAACCAAT 6309 Query 541 TTCACGCCTTTGAAACCGCAAGAACAAAGAATGTTTTCTTTATTCCCTCTGCCGCCGGCT 600 | || || ||| || | | | ||||| | | | || || ||||| ||| ||||||| Sbjct 6308 TCCATGCTTTTTCTACGGAACGCACAAAAAGTCTATTTTTCATTCCAAGTGCTGCCGGCT 6249 Query 601 ATGACCACGACCAATTCTTCGGACGTGTTTATCCTTTGAATATGTTCGCCGCAATTCATG 660 |||| || || ||||| ||||||||||||| |||||||||||||| || || |||||| Sbjct 6248 ATGATCATGATCAATTTTTCGGACGTGTTTTCCCTTTGAATATGTTTGCAGCTGTTCATG 6189 Query 661 ACTGTACTGCCACACTGCCCGG-AAACTCCTCCAAAATCGATGTCCTTAGAGACCTCTAC 719 |||| || || || || || | | | | || | ||| ||| | || | ||| Sbjct 6188 ACTGCACGGCTACTCTTTTTGGTGATGTGCCCGTGAAAC--TGTTCTTCGTGAGTTGTAC 6131 Query 720 TCCAGAGTACTCTACTCAATTACTGACCCAGCCTACACCTGCGTCATTCCCGATCTTATT 779 || | ||| ||| | || ||| || ||||||||||| ||||| || ||| | || Sbjct 6130 TCTCGGTCACTTTACACTATCGGTGATCCTGCCTACACCTGTGTCATCCCTGATTTAATA 6071 Query 780 GG------AATCACCCTTAGCGCTGCTGACATTACCCAAGCTCAATACATGA-ATTCAAA 832 || |||| | | | ||| | |||||| | ||||||| | |||| Sbjct 6070 GGCGTTTCAATCGATCAAA---CGAATGAAACCACCCAA---AATTACATGAGCTACAAA 6017 Query 833 ACT-TTACCAAGTTTTCTCTTCTGTTATTAATCCTGTCCTGTTCCGCG-ACTTTCAGCGC 890 | | || |||||| ||||| | |||| ||||||| || | ||||| |||| Sbjct 6016 ATTGTTCAGTTGTTTTCAACTCTGTGTTCAATCAAGTCCTGTATCGTGTACTTTGAGCGT 5957 Query 891 CGATCCTCCCTCGCCGCTCTATCATTCAAAGCTCCAACGTTTGCCTCTGCTAACGTTAAC 950 || || | | | || | ||| ||| | || | ||| | | | || || Sbjct 5956 CGCACCACAATAGTTGCCATGTCACTCAGTTCCCCTGCATTTCCAACATATGCGGTCAAT 5897 Query 951 GCTTATGATCTGATGTTTTCAGCCACTTCCGCTAATCTGCGTGAATTAAAGGTTGTCCTA 1010 ||||||||| |||||||| | |||||| | | || || | ||| || |||||||| | Sbjct 5896 GCTTATGATATGATGTTTGCTGCCACTCCATCCAACCTTCACGAACTAGAGGTTGTCTTT 5837 Query 1011 CAATCAGTCCATGCCGTTATCTCTGATGATGTATCATGTAAGACCAGCCTTGGTCAATTT 1070 ||||| ||| | ||| ||| |||| || ||| | | |||| |||| Sbjct 5836 CAATCCGTCTCGTATTTGATCAAAGATCATGTTCCAAGTACTAAAACGCTTGACGAATTC 5777 Query 1071 ATTGCTGATGCTACCACCTCAACAATCATTAAACATGGATACTCCACATACGCTCTTCCC 1130 ||| |||| |||| || ||| | |||||||| || ||||||| ||| || || Sbjct 5776 ATTTCTGAAAATACCGGTTCCCAAATTCTGAAACATGGTTATTCCACATTCGCCCTCCCA 5717 Query 1131 ACCTGGTCCCACAGTGAAGTCACCAACAAAGCT-CAAACCTTTC--GTGC--CATTACTG 1185 || ||||| |||| |||| || |||| || || ||| | |||| ||| | || || Sbjct 5716 ACTTGGTCTCACAATGAACTCCCCAATAAGACTACAATCTTTTCTAATGCAACCGTAATG 5657 Query 1186 CCCAACAACTAATCTCTGAAGATGCCCGTGCCCAAGACTTCTGTTTCCTTCAACGCCC 1243 | | | || | | |||| ||||| |||||||| |||||||| |||||||| Sbjct 5656 CGC--CGTGTATCCACAAAAGA---ACGTGCTCAAGACTTTTGTTTCCTCCAACGCCC 5604 Score = 107 bits (118), Expect = 3e-20 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1501 TGCCACTACTTGCCGGAAAGATCATTGAATCTTTTGAACTCGATGGAACCACTATCGAAA 1560 |||||| |||| | || ||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct 5483 TGCCAC-ACTTTCTGGCAAGATAATTGAATCATTTGAGCTAGATGGCACCACAATCGAAA 5425 Query 1561 TGCCCAATGCCATGAAATCACTCGGCATGCAAAACTGCATGTTCGCTGACTCTGCCATTC 1620 |||||||| || | || | | ||||| |||||| ||||| |||||||||| Sbjct 5424 TGCCCAATATTGACAAGCCTCTATGTTTACAAAATACCATGTTTGCTGATTCTGCCATTC 5365 Query 1621 CGTACAAGTATGTTCGCCCTGGCTCCGCTTACCATCCCGTTAATGCTGGAACCATACTGC 1680 | || ||||| ||||||||||| ||| | ||| || |||||| | || || Sbjct 5364 CTTATGGTTATGTACGCCCTGGCTCTCATTATCGTCCGCATACTGCTGGTTCAATTCT-- 5307 Query 1681 CGCCCCGTTC--TCGAGCTACTCCCAATTCCACTCCTCGCCTGCCTGCCTCGTC 1732 | | || ||| ||||| || || | || | ||||| || || ||||| || Sbjct 5306 CCCACCTTTCAATCGAGTTAAACCAGAATCTAGACCTCGTCTCCCCGCCTCTTC 5253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7140876548400