Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_010343.1 Length=1717 Score E Sequences producing significant alignments: (Bits) Value seq6 105 7e-20 >seq6 Length=8244739 Score = 105 bits (116), Expect = 7e-20 Identities = 223/328 (68%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 662 TCTACACCTGACGTTGCTTTTACAAGAACGCAACTCTCTCAAGTCAAAGTGAAGACCAAG 721 ||||||||||| | ||||||||| ||||||||| | | | | | |||||||||| || Sbjct 2516802 TCTACACCTGATGATGCTTTTACTAGAACGCAATTATGTTAGATGAAAGTGAAGAGAAAA 2516861 Query 722 GTTAGAAATGTATGGGGTGAAGCGTTTCATTACGTTTTGCTGGAAGGCCTT-TTTGCCGA 780 ||||| || || || || ||||| || | |||| | | | ||||| || ||||| || Sbjct 2516862 GTTAGGAACGTTTGAGGAGAAGCATTCCTTTACATCCTCTTAGAAGGATTTATTTGCTGA 2516921 Query 781 CCCATTGATC-AACTTCTTCTCCAACGA-AGAATCTTTCTACTTTATAGGAAGAAATCCG 838 |||| | ||| ||| | || | | || || ||||||| |||||| |||| Sbjct 2516922 CCCACTCATCGAACATTTTAT--AGGGAGTGACAACTTCTACTCTATAGGCCACCATCCT 2516979 Query 839 TTGCTCAGTGTACCTACATTAATCGAGGAAATCTTCAAATCCAAGGACTACGTATATGCG 898 ||| | ||| ||| | ||||||||| || || | || |||||||| || | Sbjct 2516980 TTGTTTGTTGTTCCTCTACTAATCGAGGTCATATTACGAGATAATGACTACGTCTACATG 2517039 Query 899 TTCGATTGGTCCGGGTTTGATGCCTCCGTTCAAGAATGGGAAATCCGTTTCGCCTTTCAA 958 || || | ||| | || ||| ||| | | |||||||||| | |||||| |||| | Sbjct 2517040 TTTGACTAGTCAGTTTTCGATTCCTTAGAACGAGAATGGGAATTTTGTTTCGTCTTTGAG 2517099 Query 959 TGTCTGGAGTCACAGCTGATATTTCCTT 986 ||| | ||| || ||||||||| Sbjct 2517100 CTACTGAAATCAATACTCGTATTTCCTT 2517127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5383799566992