Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_006276.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
seq15408 125 8e-26
>seq15408
Length=95334
Score = 125 bits (138), Expect = 8e-26
Identities = 559/872 (64%), Gaps = 35/872 (4%)
Strand=Plus/Minus
Query 304 GTGCCCCTGCTATGCTTGAACTTTCCGCTGCCTACCCTATGTACACCGAACAACGTCGTG 363
|||| ||||| | ||||||||| | | | | ||||||| | || | |||||||
Sbjct 36173 GTGCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTCACA 36114
Query 364 CACCCAACTACTATGTGCCTGACGCACAACTTCTCTTCCACACCCTCGGTGTCTGCGACC 423
||| |||||| || ||||| || || | || || || || || ||||||||
Sbjct 36113 TCCCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACG 36054
Query 424 AACTGATGACCACAACTGACCGCTTCCTCCGCTCCATGCCTTCATGGTTGCCAATCGTCT 483
|||||| ||| ||||||||||| || || | ||| | ||| | || |||||||
Sbjct 36053 GTATGATGAACACCACTGACCGCTTTCTGAAGTCAAATCCTGCTTGGCTCCCCATCGTCT 35994
Query 484 CTCAGCTTTACGTCTCTGTCCTTTGGAATGTTATGATACTCAAGGTCTATGTCAACACCG 543
|||||||||| ||||||| ||||||||| | ||||| || || | | || | |
Sbjct 35993 CTCAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTG 35934
Query 544 GTTACGGTGCTGCCT--ACGCACATGACTTGGATGTCCTCCTCAACCACCTTCAAATTAA 601
| || |||||||| | | | ||| || ||| | | | || | || |
Sbjct 35933 GCTATGGTGCTGCGTTCATTCCCAT--TCTGAATGATTATGTGAGAAATCTCCGTATCGA 35876
Query 602 CGAATGTATGATCCCTGGCCCCCTCGTCCCCTTTTTCCAATCCCTCGCTGCCGTCAATGG 661
||||||||||| ||||| || |||||||||||||||||| | || ||||| || || |
Sbjct 35875 TGAATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAAAG- 35817
Query 662 CCCTTTTGACTGGATAGGTGATATTATTCCTGC-CATGCCATCAT-TCACTGAACTCTGG 719
|||| | || ||| ||| |||| || | ||| | | || ||| | |||
Sbjct 35816 -----TTGATCGTATCGGTTGTATCCTTCCGGCGTTTCCCAACTTCTCGCTG--TTTTGG 35764
Query 720 ACTGATGAA-TTTGCTCCCCATGCTG---CTTACGCTAGGCAAATACCCATACCTGCCAT 775
||| |||| || || | | | ||| ||||| |||||||| || | ||||| ||
Sbjct 35763 TCTGGTGAACATTTCTGCGC-TACTGACAATTACGTCAGGCAAATCCCTGTTCCTGCGAT 35705
Query 776 CCTCCTTGATCAGCTTTACCGTTTTGCCACTCTTGCCTTTGATGCTCAACTACAAACAAA 835
| | || || || || || ||||| || || | | |||| | | |||| ||
Sbjct 35704 CATACTCGACCAACTCTATTACTTTGCGAC-CT--GCAATCATGCAGAGGTCCAAAATAA 35648
Query 836 ---CTATGCCACTTTTGAATGGTATAGCAACATTTTCAACCAAGATGTCAA--CACTCAC 890
|||||||| ||| ||||||| |||||||| |||| | ||| | || |
Sbjct 35647 TCGTTATGCCACGTTTTTGTGGTATAATAACATTTTTAACC--GCACCCAATCCGCTGGC 35590
Query 891 AATGCTCGTCTCCGCCTCGGCCCTCAACTCTGTGGCTCTCTGTTCACAACACAAGCCCAG 950
|| ||| | || || || || || || ||||| ||||| | || | | |
Sbjct 35589 AACATTCGCCATCGACTAGGACCGCAGCTTTGTGGTTCTCTCTATACTTGTTGCTCTCTG 35530
Query 951 TGTGACTCCGCCCGCGCCTTCTGGAACCCAGCTTTTGCTAATGGGTTTACTAGAATCGAT 1010
| || | ||| | || |||| | | |||||| ||| || || | ||||||
Sbjct 35529 TTCGATGCAGCCTTCTGTTTTTGGAGCTCTGCTTTTCACTGTGGCTTCACCCGTATCGAT 35470
Query 1011 GCTGCTAATGGCC------CCCTAATGGCTTTTCCCCAACTACTTGGATTTATTTCTCAA 1064
||||| || || || | || | | ||||| |||| || |||
Sbjct 35469 GCTGCCCCTGACCAATCTTTTCTTGTTAATTATGCTCAACTTTTTGGGTTCCAAGGCCAA 35410
Query 1065 GATGGTGCCCTGCAATCTAACTGGTTCATGCACATCTCCTTAATCATGCACAAGTACGCT 1124
|||||| | | ||| ||||||| ||| || || || | ||||| |||||||||
Sbjct 35409 GATGGTTCTGTTCAAATCGACTGGTTTCAGCAGATTTCAATAGTTATGCAGAAGTACGCT 35350
Query 1125 CAGTACTTCAATGGTTCTGTACCCCTTAAGTC 1156
|| |||||||| | ||||||||||| || ||
Sbjct 35349 CAATACTTCAACGAGTCTGTACCCCTGAAATC 35318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5354233771392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |