Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_006276.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value seq15408 125 8e-26 >seq15408 Length=95334 Score = 125 bits (138), Expect = 8e-26 Identities = 559/872 (64%), Gaps = 35/872 (4%) Strand=Plus/Minus Query 304 GTGCCCCTGCTATGCTTGAACTTTCCGCTGCCTACCCTATGTACACCGAACAACGTCGTG 363 |||| ||||| | ||||||||| | | | | ||||||| | || | ||||||| Sbjct 36173 GTGCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTCACA 36114 Query 364 CACCCAACTACTATGTGCCTGACGCACAACTTCTCTTCCACACCCTCGGTGTCTGCGACC 423 ||| |||||| || ||||| || || | || || || || || |||||||| Sbjct 36113 TCCCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACG 36054 Query 424 AACTGATGACCACAACTGACCGCTTCCTCCGCTCCATGCCTTCATGGTTGCCAATCGTCT 483 |||||| ||| ||||||||||| || || | ||| | ||| | || ||||||| Sbjct 36053 GTATGATGAACACCACTGACCGCTTTCTGAAGTCAAATCCTGCTTGGCTCCCCATCGTCT 35994 Query 484 CTCAGCTTTACGTCTCTGTCCTTTGGAATGTTATGATACTCAAGGTCTATGTCAACACCG 543 |||||||||| ||||||| ||||||||| | ||||| || || | | || | | Sbjct 35993 CTCAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTG 35934 Query 544 GTTACGGTGCTGCCT--ACGCACATGACTTGGATGTCCTCCTCAACCACCTTCAAATTAA 601 | || |||||||| | | | ||| || ||| | | | || | || | Sbjct 35933 GCTATGGTGCTGCGTTCATTCCCAT--TCTGAATGATTATGTGAGAAATCTCCGTATCGA 35876 Query 602 CGAATGTATGATCCCTGGCCCCCTCGTCCCCTTTTTCCAATCCCTCGCTGCCGTCAATGG 661 ||||||||||| ||||| || |||||||||||||||||| | || ||||| || || | Sbjct 35875 TGAATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAAAG- 35817 Query 662 CCCTTTTGACTGGATAGGTGATATTATTCCTGC-CATGCCATCAT-TCACTGAACTCTGG 719 |||| | || ||| ||| |||| || | ||| | | || ||| | ||| Sbjct 35816 -----TTGATCGTATCGGTTGTATCCTTCCGGCGTTTCCCAACTTCTCGCTG--TTTTGG 35764 Query 720 ACTGATGAA-TTTGCTCCCCATGCTG---CTTACGCTAGGCAAATACCCATACCTGCCAT 775 ||| |||| || || | | | ||| ||||| |||||||| || | ||||| || Sbjct 35763 TCTGGTGAACATTTCTGCGC-TACTGACAATTACGTCAGGCAAATCCCTGTTCCTGCGAT 35705 Query 776 CCTCCTTGATCAGCTTTACCGTTTTGCCACTCTTGCCTTTGATGCTCAACTACAAACAAA 835 | | || || || || || ||||| || || | | |||| | | |||| || Sbjct 35704 CATACTCGACCAACTCTATTACTTTGCGAC-CT--GCAATCATGCAGAGGTCCAAAATAA 35648 Query 836 ---CTATGCCACTTTTGAATGGTATAGCAACATTTTCAACCAAGATGTCAA--CACTCAC 890 |||||||| ||| ||||||| |||||||| |||| | ||| | || | Sbjct 35647 TCGTTATGCCACGTTTTTGTGGTATAATAACATTTTTAACC--GCACCCAATCCGCTGGC 35590 Query 891 AATGCTCGTCTCCGCCTCGGCCCTCAACTCTGTGGCTCTCTGTTCACAACACAAGCCCAG 950 || ||| | || || || || || || ||||| ||||| | || | | | Sbjct 35589 AACATTCGCCATCGACTAGGACCGCAGCTTTGTGGTTCTCTCTATACTTGTTGCTCTCTG 35530 Query 951 TGTGACTCCGCCCGCGCCTTCTGGAACCCAGCTTTTGCTAATGGGTTTACTAGAATCGAT 1010 | || | ||| | || |||| | | |||||| ||| || || | |||||| Sbjct 35529 TTCGATGCAGCCTTCTGTTTTTGGAGCTCTGCTTTTCACTGTGGCTTCACCCGTATCGAT 35470 Query 1011 GCTGCTAATGGCC------CCCTAATGGCTTTTCCCCAACTACTTGGATTTATTTCTCAA 1064 ||||| || || || | || | | ||||| |||| || ||| Sbjct 35469 GCTGCCCCTGACCAATCTTTTCTTGTTAATTATGCTCAACTTTTTGGGTTCCAAGGCCAA 35410 Query 1065 GATGGTGCCCTGCAATCTAACTGGTTCATGCACATCTCCTTAATCATGCACAAGTACGCT 1124 |||||| | | ||| ||||||| ||| || || || | ||||| ||||||||| Sbjct 35409 GATGGTTCTGTTCAAATCGACTGGTTTCAGCAGATTTCAATAGTTATGCAGAAGTACGCT 35350 Query 1125 CAGTACTTCAATGGTTCTGTACCCCTTAAGTC 1156 || |||||||| | ||||||||||| || || Sbjct 35349 CAATACTTCAACGAGTCTGTACCCCTGAAATC 35318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5354233771392