Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_007242.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value seq15408 113 5e-22 >seq15408 Length=95334 Score = 113 bits (124), Expect = 5e-22 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 315 CCTCTGCTCCTGCTCTCCTGGAATTAGCTGCTGCTTATCCCATGTACACCGAGCAACGCC 374 ||| ||||||||| || || ||| | |||| | | || ||| | || | |||||| | Sbjct 36176 CCTGTGCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTC 36117 Query 375 GTTCATTCA--ACTTTTTCATCCCAGACTCCCAAATGATGTTTCACTCTTTAGGTATCTG 432 ||| | ||| ||| | || || | || ||| | ||||| | |||| ||||| Sbjct 36116 A--CATCCCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTG 36059 Query 433 CGACTCAATGATGAACTCCACCGATCGTTTTCTTCGATCCTCACCCGCTTGGCTCCCCAT 492 |||| ||||||||| |||| || || ||||| || || |||||||||||||| Sbjct 36058 CGACGGTATGATGAACACCACTGACCGCTTTCTGAAGTCAAATCCTGCTTGGCTCCCCAT 35999 Query 493 CGTTTCACAACTTTACATCTCTGTACTGTGGAATGTTATGATTATCCG 540 ||| || || ||||| |||||||| || |||||| | ||||||||||| Sbjct 35998 CGTCTCTCAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCG 35951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5581324928960