Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_022615.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value seq15408 147 3e-32 >seq15408 Length=95334 Score = 147 bits (162), Expect = 3e-32 Identities = 211/294 (72%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 384 ACTTCTTTGTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCAAATGA 443 ||| ||| || ||||| | |||||||| || ||||| || | || || ||| |||| Sbjct 36107 ACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACGGTATGA 36048 Query 444 TGAACTCTACTGAACGATTTCTTCGTTCTTCTCCTGCCTGGATGCCCATTGTCTCACAGC 503 ||||| | ||||| || ||||| || |||||| ||| | ||||| ||||| |||| Sbjct 36047 TGAACACCACTGACCGCTTTCTGAAGTCAAATCCTGCTTGGCTCCCCATCGTCTCTCAGC 35988 Query 504 TCTACATTTCAGTTCTCTGGAATGTCATGATTCTCAATGTTTTTGTCAACTCTGGCTATG 563 | || || || || || |||||| |||||||| || |||||| || |||||||||| Sbjct 35987 TTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTGGCTATG 35928 Query 564 GCTCCGCCTTTTCTTCGTTCCTA-TCTGAA-CTTTATG---GCGTCCTCCGGATCGACGA 618 | | || ||| |||| | |||||| ||||| | ||||| ||||| || Sbjct 35927 GTGCTGC-----GTTCATTCCCATTCTGAATGATTATGTGAGAAATCTCCGTATCGATGA 35873 Query 619 ATGCATGATCCCCGGACCACTCGTCCCCTTCTTCCAAGCTTTGGCCGCCGTCAA 672 ||| ||||| || || || ||||||||||| ||||||||| | || || || || Sbjct 35872 ATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAA 35819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5766836015424