Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_022617.1 Length=1710 Score E Sequences producing significant alignments: (Bits) Value seq15408 221 1e-54 >seq15408 Length=95334 Score = 221 bits (244), Expect = 1e-54 Identities = 718/1101 (65%), Gaps = 47/1101 (4%) Strand=Plus/Minus Query 261 GCTCCTGCTCTCCTCGAACTCTCCGCTGCCTACCCGATGTATACTGAACAACGTCGTGGT 320 |||||||| || || ||||| | | | | ||| ||| |||||| ||||||| Sbjct 36171 GCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTCACATC 36112 Query 321 GTTAACTTCTTTGTCCCTGACTCCCAAATGCTCTTTCACGTTTTGGGTATGTGTGACCAA 380 ||| ||| || ||||| | || ||||| ||||| ||| | || || || ||| Sbjct 36111 CCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACGGT 36052 Query 381 ATGATGAACTCTACTGACCGATTTCTTAGGTCCTCCCCTGCTTGGCTCCCTATCGTCTCC 440 ||||||||| | |||||||| ||||| | ||| |||||||||||||| |||||||| Sbjct 36051 ATGATGAACACCACTGACCGCTTTCTGAAGTCAAATCCTGCTTGGCTCCCCATCGTCTCT 35992 Query 441 CAGCTTTACATAGCTGTTCTCTGGAATGTTATGATCTGCCGTGTTTACATAAACACTGGC 500 |||||||| || |||| || |||||| | ||||| ||| |||| | || ||||| Sbjct 35991 CAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTGGC 35932 Query 501 TATGCTAGC--CATCTAGCTCCCATCATCGATGTTCTCATCTCTCATCTGCAAATCCATG 558 |||| | || | | | |||||| | ||| | | |||| | ||| ||| Sbjct 35931 TATGGT-GCTGCGT-TCATTCCCATTCTGAATGATTATGTGAGAAATCTCCGTATCGATG 35874 Query 559 AATGCATGATCCCTGGACCTTTAGTTCCTTTCTTTCAATCCCTTGCTGCCGTAAATGGCC 618 |||| ||||| ||||| ||| | || || || || ||| | |||||||| || || | Sbjct 35873 AATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAAAG--- 35817 Query 619 CTTTTGACTGGATAGGTGACATTACTCCTGC-CATGCCTGCTTTTGCAAGTCTCTGGAAT 677 |||| | || ||| || ||| || | || ||| | || | ||| | Sbjct 35816 ---TTGATCGTATCGGTTGTATCCTTCCGGCGTTTCCCAACTTCTCGCTGT-TTTGGTCT 35761 Query 678 GCTGAACAATTTACCGCTCGAGATAGTTATGCTCGTCAAATCCCCATACCTGCCATTATT 737 | |||||| || |||| || | ||| | | |||||||| | ||||| || || Sbjct 35760 GGTGAACATTTCTGCGCTACTGACAATTACGTCAGGCAAATCCCTGTTCCTGCGATCATA 35701 Query 738 CTCGATCAACTTCACCACTTTGCCACCCGTGCTATTGTAGCCGGAGTTGCCAA------- 790 ||||| ||||| | ||||||| ||| ||| || | | ||| | | || Sbjct 35700 CTCGACCAACTCTATTACTTTGCGACC--TGCAAT--CATGCAGAGGTCCAAAATAATCG 35645 Query 791 TTATGGTACTTTTGAATGGTATAGAAGCATTTTCAACCG------TGGTGTTGGTGCAAC 844 ||||| || ||| ||||||| | |||||| ||||| | || ||||| Sbjct 35644 TTATGCCACGTTTTTGTGGTATAATAACATTTTTAACCGCACCCAATCCGCTG--GCAAC 35587 Query 845 CCCCGCCAACTCAAGACTTGGACCACAACTTTGTGGCTCCCTTTTCACCACTAATGCTCA 904 ||||| | |||| ||||| || |||||||| || || | || | ||| Sbjct 35586 ATTCGCCATC----GACTAGGACCGCAGCTTTGTGGTTCTCTCTATACTTGTTGCTCTCT 35531 Query 905 ATTCGATGCCG-CTCGTGCTTTTTGGAACTCTGCCCTTGCTTCTGGTATTACCCGTACTG 963 |||||||| | || || |||||||| |||||| || | ||| | ||||||| | Sbjct 35530 GTTCGATGCAGCCTTCTG-TTTTTGGAGCTCTGCTTTTCACTGTGGCTTCACCCGTATCG 35472 Query 964 ATGCCGCTCGTCCCC------CGCTCGTCAATTACGCTCAGTTGCTTGGCTTCCAAGCCC 1017 |||| || | | || || || ||||| ||||| | |||| ||||||| || Sbjct 35471 ATGCTGCCCCTGACCAATCTTTTCTTGTTAATTATGCTCAACTTTTTGGGTTCCAAGGCC 35412 Query 1018 AAGATGGTTCAGACCAACTCAATTGGTTTCAGTTTACTTCTTCAGTGATGCAAACTTACT 1077 |||||||||| | ||| || | ||||||||| | ||| ||| ||||| | ||| Sbjct 35411 AAGATGGTTCTGTTCAAATCGACTGGTTTCAGCAGATTTCAATAGTTATGCAGAAGTACG 35352 Query 1078 GCCAATACTTCAATGGTTCTGTGCCTCTCAAATCTATCTCCCTCACTGGTATAGGTGCTG 1137 ||||||||||| | ||||| || || |||||| | | ||||| ||| |||| || Sbjct 35351 CTCAATACTTCAACGAGTCTGTACCCCTGAAATCTGTGGCTCTCACAGGTTTAGGCTCTT 35292 Query 1138 TCGTTACCTACGGAATCCCCGTTAACAACGTAGCCACCCGAAACTGGTTTTATCCTACTG 1197 | | ||||| | | | |||||| || |||| || |||||| | || || | | Sbjct 35291 GTGCTGTTTACGGCACTCTTGCTAACAATGTGTCCACACGCAACTGGATCTACCCAAAAG 35232 Query 1198 CTGCTATGATCGAACCTTTCGCCACATCCCGCTATGCTCCCCGCCGTGAAATACCAAATC 1257 | | | | | ||||| || || |||| ||| || | ||||| ||||| || Sbjct 35231 CCGACAGTTTAGCTCCTTTTGCAACCAGTCGCTTTGCGCCGCTGCGTGAGATACC--CTC 35174 Query 1258 AA-CTT-GCTGTCAAATTTCAACATGCTGACCACGAGGTCGAAGAACAAGCCGAACAATA 1315 || ||| |||| | ||||| |||||| || | || |||| ||| || ||| | || Sbjct 35173 AATCTTCTCTGTGACATTTCGTCATGCTAACTATGAACTCGAGGAATTTGCAGAAAAGTA 35114 Query 1316 TGCGATTCTCACCCACACTAA 1336 || || | | |||||||| Sbjct 35113 CGCTGTTGTGTCTCACACTAA 35093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5360630705408