Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_033771.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
seq15408 122 1e-24
>seq15408
Length=95334
Score = 122 bits (134), Expect = 1e-24
Identities = 553/865 (64%), Gaps = 19/865 (2%)
Strand=Plus/Minus
Query 312 GCTCCTGCTTTACTGGAGCTTGCTGCTGCCTACCCCATGTCCACGGAACAAAGGCGTTCC 371
|||||||| | || || ||||||| | | ||| ||| || | ||| | | |
Sbjct 36171 GCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTCACATC 36112
Query 372 CCAAACACCTTCGTCCCTGACGCCCAGATGCTTTTCCATGTCCTCAGCTTATGCGACAAC 431
|| || |||||| ||||| || ||||||||||| ||||| || || | ||||||
Sbjct 36111 CCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACGGT 36052
Query 432 ATGATGCTGTCTACCGACCG-TTTCACCCGCTCTGCTCCCGCCTGGCTCCCCATCGTCTC 490
|||||| | || ||||| |||| | || ||| || |||||||||||||||||
Sbjct 36051 ATGATGAACACCACTGACCGCTTTCTGAAG-TCAAATCCTGCTTGGCTCCCCATCGTCTC 35993
Query 491 GCAGCTTTACATTTCCATCCTTTGGTTCACCATGATTCTCAAAGTGTATGTCAACTCCTC 550
|||||||| || || | |||||| ||||||| || ||| | | || ||
Sbjct 35992 TCAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTGG 35933
Query 551 CTATGGAGCCATGCACGCTCACCTCCTGAATATCTTAGTCGCCCATCTTCGTATAGATGA 610
|||||| || | | || | | |||||| | || |||| ||||| |||||
Sbjct 35932 CTATGGTGCTGCGTTCATTCCCATTCTGAATGATTATGTGAGAAATCTCCGTATCGATGA 35873
Query 611 GTGCCTTATTCCTGGACCTCTCGTCCCATTCTTCCAATCTCTTGGAGCCATTAACGGCCC 670
|| | |||||||| ||||||||||| || |||||| |||||| || | || |
Sbjct 35872 ATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAAAG---- 35817
Query 671 TTTTGAATGGATCGGAGACATAGTGCCGATCATCCCCGAATTTTCTCAGCTTTGG--AAC 728
|||| | ||||| || | ||| | ||| | || || | | |||||
Sbjct 35816 --TTGATCGTATCGGTTGTATCCTTCCGGCGTTTCCCAACTTCTCGCTGTTTTGGTCTGG 35759
Query 729 ACCACATCGTTCTACCCCACTGACTCATTCG-CTCGCATCTTCCCCATCCCTGCTATCCT 787
|||| |||| | | |||||| | || | ||| |||| | ||||| ||| |
Sbjct 35758 TGAACAT--TTCTGCGCTACTGACAATTACGTCAGGCA-AATCCCTGTTCCTGCGATCAT 35702
Query 788 CCTCGATCAACTGCACTACTTTGCCTCCATCA--CAGTCACCGAACAAGAAACCAT-TTT 844
||||| ||||| | |||||||| || || || || | | | ||| || ||
Sbjct 35701 ACTCGACCAACTCTATTACTTTGCGACCTGCAATCATGCAGAGGTCCA-AAATAATCGTT 35643
Query 845 CGGTCAC-TTTGAATGGTACAGAAACATTTTCTCTCTCGGCCAAGGCACCTTCAACCCCC 903
| ||| ||| ||||| | |||||||| | | |||| | | |||| |
Sbjct 35642 ATGCCACGTTTTTGTGGTATAATAACATTTTTAACCGCACCCAATCCGCTGGCAACATTC 35583
Query 904 GCCTTCGCCTAGGCCCGCAACTCTGTGGCTCCCTCTATGCCACCGAATCTCAGGTCACCA 963
||| ||| ||||| ||||| || ||||| || |||||| | |||| | ||
Sbjct 35582 GCCATCGACTAGGACCGCAGCTTTGTGGTTCTCTCTATACTTGTTGCTCTCTGTTCGATG 35523
Query 964 ACGCTCGCACTTTTTGGAGCGCTGCCCTCCGCACCGGGATAACCCGCACCAATGCCGCAG 1023
|| | |||||||||| |||| | | | || | ||||| | | |||| ||
Sbjct 35522 CAGCCTTCTGTTTTTGGAGCTCTGCTTTTCACTGTGGCTTCACCCGTATCGATGCTGCCC 35463
Query 1024 CTAATCAACCTCTTTTTAGCTCCTACCCTCAACTCCTTGGTTTCGTCGACCAGAACGACG 1083
|| | ||| || || || || ||||||| |||| ||| | ||| | |
Sbjct 35462 CTGACCAATCTTTTCTTGTTAATTATGCTCAACTTTTTGGGTTCCAAGGCCAAGATGGTT 35403
Query 1084 CTATGCAGCTGGACTGGTTCCAGCACACAGCCATAGTCATGCAGAAGTACTGTCAGTACT 1143
|| | || | |||||||| ||||| | | ||||| |||||||||||| ||| ||||
Sbjct 35402 CTGTTCAAATCGACTGGTTTCAGCAGATTTCAATAGTTATGCAGAAGTACGCTCAATACT 35343
Query 1144 TCAATGGCTCCGTTCCCCTCAAATC 1168
|||| | || || ||||| |||||
Sbjct 35342 TCAACGAGTCTGTACCCCTGAAATC 35318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5526950989824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |