Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_033771.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value seq15408 122 1e-24 >seq15408 Length=95334 Score = 122 bits (134), Expect = 1e-24 Identities = 553/865 (64%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 312 GCTCCTGCTTTACTGGAGCTTGCTGCTGCCTACCCCATGTCCACGGAACAAAGGCGTTCC 371 |||||||| | || || ||||||| | | ||| ||| || | ||| | | | Sbjct 36171 GCTCCTGCACTTCTTGAACTTGCTGTAGTGTGCCCTATGCATACTGTGCAACGTCACATC 36112 Query 372 CCAAACACCTTCGTCCCTGACGCCCAGATGCTTTTCCATGTCCTCAGCTTATGCGACAAC 431 || || |||||| ||||| || ||||||||||| ||||| || || | |||||| Sbjct 36111 CCCCACTACTTCGTTCCTGATGCGCAGATGCTTTTTCATGTTCTAGGCATCTGCGACGGT 36052 Query 432 ATGATGCTGTCTACCGACCG-TTTCACCCGCTCTGCTCCCGCCTGGCTCCCCATCGTCTC 490 |||||| | || ||||| |||| | || ||| || ||||||||||||||||| Sbjct 36051 ATGATGAACACCACTGACCGCTTTCTGAAG-TCAAATCCTGCTTGGCTCCCCATCGTCTC 35993 Query 491 GCAGCTTTACATTTCCATCCTTTGGTTCACCATGATTCTCAAAGTGTATGTCAACTCCTC 550 |||||||| || || | |||||| ||||||| || ||| | | || || Sbjct 35992 TCAGCTTTATATCTCTGTGCTTTGGAATTTCATGATTATCCGAGTTTTTAATAAGTCTGG 35933 Query 551 CTATGGAGCCATGCACGCTCACCTCCTGAATATCTTAGTCGCCCATCTTCGTATAGATGA 610 |||||| || | | || | | |||||| | || |||| ||||| ||||| Sbjct 35932 CTATGGTGCTGCGTTCATTCCCATTCTGAATGATTATGTGAGAAATCTCCGTATCGATGA 35873 Query 611 GTGCCTTATTCCTGGACCTCTCGTCCCATTCTTCCAATCTCTTGGAGCCATTAACGGCCC 670 || | |||||||| ||||||||||| || |||||| |||||| || | || | Sbjct 35872 ATGTATGATTCCTGGGCCTCTCGTCCCCTTTTTCCAAGCTCTTGCTGCTGTGAAAG---- 35817 Query 671 TTTTGAATGGATCGGAGACATAGTGCCGATCATCCCCGAATTTTCTCAGCTTTGG--AAC 728 |||| | ||||| || | ||| | ||| | || || | | ||||| Sbjct 35816 --TTGATCGTATCGGTTGTATCCTTCCGGCGTTTCCCAACTTCTCGCTGTTTTGGTCTGG 35759 Query 729 ACCACATCGTTCTACCCCACTGACTCATTCG-CTCGCATCTTCCCCATCCCTGCTATCCT 787 |||| |||| | | |||||| | || | ||| |||| | ||||| ||| | Sbjct 35758 TGAACAT--TTCTGCGCTACTGACAATTACGTCAGGCA-AATCCCTGTTCCTGCGATCAT 35702 Query 788 CCTCGATCAACTGCACTACTTTGCCTCCATCA--CAGTCACCGAACAAGAAACCAT-TTT 844 ||||| ||||| | |||||||| || || || || | | | ||| || || Sbjct 35701 ACTCGACCAACTCTATTACTTTGCGACCTGCAATCATGCAGAGGTCCA-AAATAATCGTT 35643 Query 845 CGGTCAC-TTTGAATGGTACAGAAACATTTTCTCTCTCGGCCAAGGCACCTTCAACCCCC 903 | ||| ||| ||||| | |||||||| | | |||| | | |||| | Sbjct 35642 ATGCCACGTTTTTGTGGTATAATAACATTTTTAACCGCACCCAATCCGCTGGCAACATTC 35583 Query 904 GCCTTCGCCTAGGCCCGCAACTCTGTGGCTCCCTCTATGCCACCGAATCTCAGGTCACCA 963 ||| ||| ||||| ||||| || ||||| || |||||| | |||| | || Sbjct 35582 GCCATCGACTAGGACCGCAGCTTTGTGGTTCTCTCTATACTTGTTGCTCTCTGTTCGATG 35523 Query 964 ACGCTCGCACTTTTTGGAGCGCTGCCCTCCGCACCGGGATAACCCGCACCAATGCCGCAG 1023 || | |||||||||| |||| | | | || | ||||| | | |||| || Sbjct 35522 CAGCCTTCTGTTTTTGGAGCTCTGCTTTTCACTGTGGCTTCACCCGTATCGATGCTGCCC 35463 Query 1024 CTAATCAACCTCTTTTTAGCTCCTACCCTCAACTCCTTGGTTTCGTCGACCAGAACGACG 1083 || | ||| || || || || ||||||| |||| ||| | ||| | | Sbjct 35462 CTGACCAATCTTTTCTTGTTAATTATGCTCAACTTTTTGGGTTCCAAGGCCAAGATGGTT 35403 Query 1084 CTATGCAGCTGGACTGGTTCCAGCACACAGCCATAGTCATGCAGAAGTACTGTCAGTACT 1143 || | || | |||||||| ||||| | | ||||| |||||||||||| ||| |||| Sbjct 35402 CTGTTCAAATCGACTGGTTTCAGCAGATTTCAATAGTTATGCAGAAGTACGCTCAATACT 35343 Query 1144 TCAATGGCTCCGTTCCCCTCAAATC 1168 |||| | || || ||||| ||||| Sbjct 35342 TCAACGAGTCTGTACCCCTGAAATC 35318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5526950989824