Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq52 152 6e-34 >seq52 Length=6559834 Score = 152 bits (168), Expect = 6e-34 Identities = 156/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 376 ATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGAC 435 ||| | ||||| |||||||||||| | || || ||| ||| ||||| |||||||||||| Sbjct 4167966 ATCGTGCACCCGACACAGGGCAGGTTATCTCAATACAGCCCGTCCTGTCACATGATGGAC 4167907 Query 436 TACATTCTTCACTCTATCAATTCAACTCTCTGTG--ATAATTACTACTTCAAGAGAGAAA 493 || ||| | ||| |||| || || || || || |||| | |||||||||| ||| | Sbjct 4167906 TATATTGTCCACGCTATGAA--CAGGTCACTATGCAATAACTTCTACTTCAAGCGAGCCA 4167849 Query 494 CTCCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGT 553 || |||||||| |||||||||||||| || |||||||| || || |||||| | |||| Sbjct 4167848 ACCCTAACTACCATCCTTACATTCTCCGCCTTTACTTCGGTGTACTCTTCTGGATCCAGT 4167789 Query 554 GCTTGCGCGCTGGAAATGATGT 575 | | || |||||||| || || Sbjct 4167788 GTCTACGAGCTGGAAACGACGT 4167767 Score = 132 bits (146), Expect = 5e-28 Identities = 360/549 (66%), Gaps = 23/549 (4%) Strand=Plus/Minus Query 982 TCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATGAATGAAGCGTTCGCTGAA 1041 || |||||| | |||||| ||||| || ||| || | || ||||| ||||||||| Sbjct 4167396 TCTCCCGGCTTGCAGTATAAATGTGAGGCGGACCAGAGTTTAAACGAAGCATTCGCTGAA 4167337 Query 1042 CGTTTCTATGATTTTGACTT--TCCTGCCTTTAACGCAGATGACAATCTCTCCACCATCA 1099 || | | ||||||||| ||| || | ||| || || || ||| ||| Sbjct 4167336 CGCTATCCTAGTTTTGACTTCGTCC--CCACTGCCGCTACCGATAAGCTGACCAGTATCT 4167279 Query 1100 CCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATCCGGGCCAAGGAAGTCGCCT 1159 || ||||||||||||| ||| |||||||||| | || | ||| ||||| ||| Sbjct 4167278 CCTCTTTCCTCCACATGAAACGAAGCGTGGCTTGGTTTAACCAAGTCAAAGAAGTTGCCA 4167219 Query 1160 GCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACTCTCGCCGACTGTTCTCCACACGGTC 1219 ||| || || || |||| | || ||||||| | |||||||| || ||||| Sbjct 4167218 TCTCCGCTGCCTCATACTTTGATGGGTCATGCACTCTTTCTGACTGTTCCCCTCACGGCA 4167159 Query 1220 TGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCA------CCTGAGGAGACTTTTG 1273 || | ||||| || | ||| | ||| ||| ||| ||| ||| Sbjct 4167158 CGGCTGCTAACCAAGTCGTGGTTTGTCTCACTAATCCGAAACACCCTCCGGAAACT---- 4167103 Query 1274 CTGATCCCCGCTTCTCCGCCGATCCAAGAG--CCCTCTATCCCTTCAGTTTCAAGCTGAA 1331 || | | ||| || || | || | | |||||| ||| | | || |||||| Sbjct 4167102 -----CCGAGATGCTCTGCTGA--CGAGCGGTCTCTCTATGAATTCGGCTACAGGCTGAA 4167050 Query 1332 GAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAGCCTTCTCCCAGACGCA 1391 ||||| || ||||||||||| || || | ||||||| || |||| ||| ||||| || Sbjct 4167049 AAGCACTGCTCACAACCTCCCTCCTCTCACACAAGCTGCTGCCGCCTACTCTCAGACACA 4166990 Query 1392 CATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGGTCAAAAGACCGACGAATC 1451 ||| |||| || | | | || | || || || ||| |||||| | | | Sbjct 4166989 TATCAGGATGTTCTCCAACCATCCCTGCCTCGCAAGTTTCGGTTCAAAGACAGCCAACAA 4166930 Query 1452 AGGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCACCGACGACACCTCCTACCT 1511 |||||||| ||| |||||||||| || ||||||||| ||||||||| |||||| | Sbjct 4166929 TGGCCCCTTCTGGAACATCAGGCCGATCGGCTCCAGCGTCACCGACGAATCCTCCTTCTA 4166870 Query 1512 CACCATCCC 1520 | ||||||| Sbjct 4166869 CTCCATCCC 4166861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532762494532