Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_030245.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value seq91882 93.3 4e-16 seq55828 93.3 4e-16 >seq91882 Length=8743 Score = 93.3 bits (102), Expect = 4e-16 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 766 CTCGGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTC 825 || || || ||| |||||| || ||||||||||| || | || ||||||||||| Sbjct 1482 CTAGGACGCCCCTCCTGGCTGTTTGACTGGCATGAGGAGAAACGGTGTTGTGCTTGGTTT 1541 Query 826 CCAATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCC 885 || || || || | |||||||||||||| ||||| || || || | |||| ||| Sbjct 1542 CCTCCTGAGGGAAACTATACAATGGATGATGTTACTATTGCCTACATTGTCGGAGCAGCC 1601 Query 886 TGTACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 |||||||| | || | || | || |||||||||||||| Sbjct 1602 TGTACTCCACATCTTGGACCTAGAGACGTTGATGATTGGCA 1642 >seq55828 Length=7347 Score = 93.3 bits (102), Expect = 4e-16 Identities = 112/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 776 CCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCAATGGAAG 835 ||| |||||| || |||||||| |||||| || ||||||||||| || | || Sbjct 530 CCACCTGGCTGTTTGACTGGCA---CGATGACAGATGTTGTGCTTGGTTTCCTCT---AG 477 Query 836 GGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTA 895 | || | |||||||| ||||| ||| | || ||||| | |||| ||||||||||| | Sbjct 476 GAAACTATACAATGGAGGATGTTACTGTTGCCTATATTGTCGGAGCAGCCTGTACTCCCA 417 Query 896 AACTCGCCCCATGCGATGTTGATGATTGGCA 926 | || || || | ||||||||||| ||||| Sbjct 416 ATCTTGCACCCAGAGATGTTGATGACTGGCA 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4800383066104