Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_030245.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value seq22123 93.3 4e-16 seq117721 87.8 2e-14 seq50219 87.8 2e-14 >seq22123 Length=755 Score = 93.3 bits (102), Expect = 4e-16 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 766 CTCGGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTC 825 || || || ||| |||||| || ||||||||||| || | || ||||||||||| Sbjct 460 CTAGGACGCCCCTCCTGGCTGTTTGACTGGCATGAGGAGAAACGGTGTTGTGCTTGGTTT 401 Query 826 CCAATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCC 885 || || || || | |||||||||||||| ||||| || || || | |||| ||| Sbjct 400 CCTCCTGAGGGAAACTATACAATGGATGATGTTACTATTGCCTACATTGTCGGAGCAGCC 341 Query 886 TGTACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 |||||||| | || | || | || |||||||||||||| Sbjct 340 TGTACTCCACATCTTGGACCTAGAGACGTTGATGATTGGCA 300 >seq117721 Length=1199 Score = 87.8 bits (96), Expect = 2e-14 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 769 GGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCA 828 || || |||| |||||| || |||||||| |||||| | ||||||||||| || Sbjct 157 GGACGCCCCACCTGGCTGTTTGACTGGCA---CGATGACAAATGTTGTGCTTGGTTTCCT 213 Query 829 ATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGT 888 | ||| || | |||||||| ||||| ||| | || | ||| | |||| |||||| Sbjct 214 CT---AGGAAACTATACAATGGAGGATGTTACTGTTGCCTCTATTGTCGGAGCAGCCTGT 270 Query 889 ACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 ||||| || || || || | ||||||||||| ||||| Sbjct 271 ACTCCAAATCTTGCACCCAGAGATGTTGATGACTGGCA 308 >seq50219 Length=480 Score = 87.8 bits (96), Expect = 2e-14 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 769 GGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCA 828 || || |||| |||||| || |||||||| |||||| | ||||||| ||| || Sbjct 324 GGACGCCCCACCTGGCTGTTTGACTGGCA---CGATGACAAATGTTGTGCTTCGTTTCCT 268 Query 829 ATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGT 888 | ||| || | |||||||| ||||| ||| | || ||||| | |||| |||||| Sbjct 267 CT---AGGAAACTATACAATGGAGGATGTTACTGTTGCCTATATTGTCGGAGCAGCCTGT 211 Query 889 ACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 ||||| || || || || | ||||||||||| ||||| Sbjct 210 ACTCCAAATCTTGCACCCAGAGATGTTGATGACTGGCA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4795635886960