Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_030245.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 4e-16 >seq5 Length=29328693 Score = 93.3 bits (102), Expect = 4e-16 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 766 CTCGGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTC 825 || || || ||| |||||| || ||||||||||| || | || ||||||||||| Sbjct 7206298 CTAGGACGCCCCTCCTGGCTGTTTGACTGGCATGAGGAGAAACGGTGTTGTGCTTGGTTT 7206239 Query 826 CCAATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCC 885 || || || || | |||||||||||||| ||||| || || || | |||| ||| Sbjct 7206238 CCTCCTGAGGGAAACTATACAATGGATGATGTTACTATTGCCTACATTGTCGGAGCAGCC 7206179 Query 886 TGTACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 |||||||| | || | || | || |||||||||||||| Sbjct 7206178 TGTACTCCACATCTTGGACCTAGAGACGTTGATGATTGGCA 7206138 Score = 93.3 bits (102), Expect = 4e-16 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 769 GGCCGTCCCAGCTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCA 828 || || |||| |||||| || |||||||| |||||| | ||||||||||| || Sbjct 7210310 GGACGCCCCACCTGGCTGTTTGACTGGCA---CGATGACAAATGTTGTGCTTGGTTTCCT 7210254 Query 829 ATGGAAGGGAATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGT 888 | ||| || | |||||||| ||||| ||| | || ||||| | |||| |||||| Sbjct 7210253 CT---AGGAAACTATACAATGGAGGATGTTACTGTTGCCTATATTGTCGGAGCAGCCTGT 7210197 Query 889 ACTCCTAAACTCGCCCCATGCGATGTTGATGATTGGCA 926 ||||| || || || || | ||||||||||| ||||| Sbjct 7210196 ACTCCAAATCTTGCACCCAGAGATGTTGATGACTGGCA 7210159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4806244344736