Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_017988.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value seq8 201 1e-48 >seq8 Length=127390875 Score = 201 bits (222), Expect = 1e-48 Identities = 251/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 103256757 ATGAATGAGGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 103256816 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 |||||||| || || |||| || ||||| || || ||| ||||| || || ||| | Sbjct 103256817 CGTACTGTCCCGCTACCCCACGAGACACTTGGACGTCCATCCTGGCTCCTGGACTGGAGG 103256876 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || |||||| |||||||| ||||| || || || Sbjct 103256877 CTGAATCAGGCTTATGCTTGGTTCCCGCAAGAAGGTCACTTCTCCAAAGAGGACCTCATT 103256936 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| || || ||||||| |||||| Sbjct 103256937 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTCGGTCCATGCGACGTAGATGAT 103256996 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || | ||| |||| ||| ||||| Sbjct 103256997 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTAAATGTCGCAAATTACGAAAGG 103257056 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATCGGACGAT 1020 || | ||| || || || | |||||| || |||||||| || || Sbjct 103257057 GCCACTCCCCGCCGCTTTTACGGAGCTGCTGAGTATCGCACTAT 103257100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4658663893578