Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_017988.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value seq9217 206 2e-50 seq5554 176 4e-41 >seq9217 Length=423540 Score = 206 bits (228), Expect = 2e-50 Identities = 252/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 110751 ATGAATGAGGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 110810 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 |||||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 110811 CGTACTGTCCCGCTACCCCACGAGACACTCGGACGTCCATTCTGGCTCCTGGACTGGAGG 110870 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || |||||| |||||||| ||||| || || || Sbjct 110871 CTGAATCAGGCTTATGCTTGGTTCCCGCAAGAAGGTCACTTCTCCAAAGAGGACCTCATT 110930 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| || || ||||||| |||||| Sbjct 110931 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTCGGTCCATGCGACGTAGATGAT 110990 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || | ||| |||| ||| ||||| Sbjct 110991 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTAAATGTCGCAAATTACGAAAGG 111050 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATCGGACGAT 1020 || | ||| || || || | |||||| || |||||||| || || Sbjct 111051 GCCACTCCCCGCCGCTTTTACGGAGCTGCTGAGTATCGCACTAT 111094 >seq5554 Length=30986 Score = 176 bits (194), Expect = 4e-41 Identities = 241/337 (72%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 28437 ATGAATGACGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 28378 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 |||||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 28377 CGTACTGTCCCGCTACCCCACGAGACACTTGGACGTCCATTCTGGCTCCTGGACTGGAGG 28318 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || | |||| |||||||| ||||| || || || Sbjct 28317 CTGAATCAGGCTTATGCTTGGTTCCCGCTAGAAGGTCACTTCTCCAAAGAGGACCTCATT 28258 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| | || |||| || || ||| Sbjct 28257 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTTAGTCCATGCGAAGTAGACGAT 28198 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || ||||| | || ||| |||| Sbjct 28197 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTCAATGTAGCAAATTACAAAAGG 28138 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATC 1013 || | ||| || || || | ||| || || ||||||| Sbjct 28137 GCCACTCCCCGCCGCTTTTACGGCGCTGCTGAGTATC 28101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4660926194962