Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_017988.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value seq6 208 7e-51 seq184 167 2e-38 seq14 167 2e-38 seq10 140 3e-30 >seq6 Length=79162310 Score = 208 bits (230), Expect = 7e-51 Identities = 429/629 (68%), Gaps = 33/629 (5%) Strand=Plus/Plus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 20136226 ATGAATGAGGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 20136285 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 |||||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 20136286 CGTACTGTCCCGCTACCCCACGAGACACTCGGACGTCCATTCTGGCTCCTGGACTGGAGG 20136345 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || |||||| |||||||| ||||| || || || Sbjct 20136346 CTGAATCAGGCTTATGCTTGGTTCCCGCAAGAAGGTCACTTCTCCAAAGAGGACCTCATT 20136405 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| || || ||||||| |||||| Sbjct 20136406 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTCGGTCCATGCGACGTAGATGAT 20136465 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || | ||| |||| ||| ||||| Sbjct 20136466 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTAAATGTCGCAAATTACGAAAGG 20136525 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATCGGACGATTTC-CACTCGCATGTG 1035 || | ||| || || || | |||||| || |||||||| || || | ||| ||| || Sbjct 20136526 GCCACTCCCCGCCGCTTTTACGGAGCTGCTGAGTATCGCACTATCGCTCACCGGCA-ATG 20136584 Query 1036 GGAACTTCC-CTTCCTATCAGCTGTCGCCGGA----CAGATGTCAGGAGCAAAGCG--CC 1088 | || || | |||||| ||| ||| || ||| | || | ||||| || Sbjct 20136585 GCTTCTACCACAAGCTATCA----TCGAAGGATGTGCACATG-CTGGTTCTAAGCGACCC 20136639 Query 1089 CAGCTC-------CAGAAAGCTCGGCCACCGGAAGCGGATACATGGAATCACCTCCAGCC 1141 |||| | || |||||| | |||| |||| | |||||| |||||||| Sbjct 20136640 CAGCCCGAACCATCATCAAGCTCAG---GTGGAACCGGACATATGGAAATTACTCCAGCC 20136696 Query 1142 GTTGAAGGTCAACA-----GACAGCAGCAATTATGGA-TCCTGGAATAATGCAAACGCGT 1195 |||||| |||||| ||| ||||| | | |||| || || ||| | Sbjct 20136697 GTTGAACCTCAACAACAACAACAACAGCAGCCACCCACTCCT---CCAAGGCTAACCAGC 20136753 Query 1196 TATTGTCAGTATCAAATCATCGATTGGTGTTATCATGGAAGAGTAATCCTCAACCTGAAC 1255 | || |||||||| ||| || |||||||| |||||| || | ||| || | | Sbjct 20136754 TTTTACCAGTATCAGCTCACTGACTGGTGTTACCATGGACTCGTGGTTTTCAGGCTCAGC 20136813 Query 1256 GCTCAGAAGCAAAATCAAGCTCTCCGCTC 1284 | ||||| || ||| ||||| ||||||| Sbjct 20136814 GAACAGAAACAGAATGAAGCTTTCCGCTC 20136842 >seq184 Length=450446 Score = 167 bits (184), Expect = 2e-38 Identities = 240/337 (71%), Gaps = 1/337 (0%) Strand=Plus/Minus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 208308 ATGAATGACGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 208249 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 | |||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 208248 C-TACTGTCCCGCTACCCCACGAGACACTTGGACGTCCATTCTGGCTCCTGGACTGGAGG 208190 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || | |||| |||||||| ||||| || || || Sbjct 208189 CTGAATCAGGCTTATGCTTGGTTCCCGCTAGAAGGTCACTTCTCCAAAGAGGACCTCATT 208130 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| | || |||| || || ||| Sbjct 208129 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTTAGTCCATGCGAAGTAGACGAT 208070 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || ||||| | || ||| |||| Sbjct 208069 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTCAATGTAGCAAATTACAAAAGG 208010 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATC 1013 || | ||| || || || | ||| || || ||||||| Sbjct 208009 GCCACTCCCCGCCGCTTTTACGGCGCTGCTGAGTATC 207973 >seq14 Length=44799946 Score = 167 bits (184), Expect = 2e-38 Identities = 240/337 (71%), Gaps = 1/337 (0%) Strand=Plus/Plus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 16400389 ATGAATGACGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 16400448 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 | |||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 16400449 C-TACTGTCCCGCTACCCCACGAGACACTTGGACGTCCATTCTGGCTCCTGGACTGGAGG 16400507 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || | |||| |||||||| ||||| || || || Sbjct 16400508 CTGAATCAGGCTTATGCTTGGTTCCCGCTAGAAGGTCACTTCTCCAAAGAGGACCTCATT 16400567 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| | || |||| || || ||| Sbjct 16400568 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTTAGTCCATGCGAAGTAGACGAT 16400627 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || ||||| | || ||| |||| Sbjct 16400628 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTCAATGTAGCAAATTACAAAAGG 16400687 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATC 1013 || | ||| || || || | ||| || || ||||||| Sbjct 16400688 GCCACTCCCCGCCGCTTTTACGGCGCTGCTGAGTATC 16400724 >seq10 Length=91128445 Score = 140 bits (154), Expect = 3e-30 Identities = 320/473 (68%), Gaps = 33/473 (7%) Strand=Plus/Minus Query 833 CACTTCTCTAAAGAAGATCTAATCGCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGA 892 |||||||| ||||| || || || || ||||| || |||||||| ||||| |||||||| Sbjct 36518052 CACTTCTCCAAAGAGGACCTCATTGCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGA 36517993 Query 893 CTAGGCCCTCGCGACGTTGATGATTGGCAATTCTTTCCAGGAAATGTCATGCCACAACAT 952 || || || ||||||| |||||||||||||||||| |||| |||| | | || || Sbjct 36517992 CTCGGTCCATGCGACGTAGATGATTGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAA 36517933 Query 953 ATCAATATCGCCGCTTATGAAAGAGCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTAT 1012 | ||| |||| ||| ||||| || | ||| || || || | |||||| || |||||| Sbjct 36517932 CTAAATGTCGCAAATTACGAAAGGGCCACTCCCCGCCGCTTTTACGGAGCTGCTGAGTAT 36517873 Query 1013 CGGACGATTTC-CACTCGCATGTGGGAACTTCC-CTTCCTATCAGCTGTCGCCGGA---- 1066 || || || | ||| ||| ||| || || | |||||| ||| ||| Sbjct 36517872 CGCACTATCGCTCACCGGCA-ATGGCTTCTACCACAAGCTATCA----TCGAAGGATGTG 36517818 Query 1067 CAGATGTCAGGAGCAAAGCG--CCCAGCTC-------CAGAAAGCTCGGCCACCGGAAGC 1117 || ||| | || | ||||| |||||| | || |||||| | |||| | Sbjct 36517817 CACATG-CTGGTTCTAAGCGACCCCAGCCCGAACCATCATCAAGCTCAG---GTGGAACC 36517762 Query 1118 GGATACATGGAATCACCTCCAGCCGTTGAAGGTCAACA-----GACAGCAGCAATTATGG 1172 ||| | |||||| |||||||||||||| |||||| ||| ||||| | Sbjct 36517761 GGACATATGGAAATTACTCCAGCCGTTGAACCTCAACAACAACAACAACAGCAGCCACCC 36517702 Query 1173 A-TCCTGGAATAATGCAAACGCGTTATTGTCAGTATCAAATCATCGATTGGTGTTATCAT 1231 | |||| || || ||| | | || |||||||| ||| || |||||||| ||| Sbjct 36517701 ACTCCT---CCAAGGCTAACCAGCTTTTACCAGTATCAGCTCACTGACTGGTGTTACCAT 36517645 Query 1232 GGAAGAGTAATCCTCAACCTGAACGCTCAGAAGCAAAATCAAGCTCTCCGCTC 1284 ||| || | ||| || | || ||||| || ||| ||||| ||||||| Sbjct 36517644 GGACTCGTGGTTTTCAGGCTCAGCGAACAGAAACAGAATGAAGCTTTCCGCTC 36517592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4661946826376