Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_017988.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value seq13 188 7e-45 >seq13 Length=58321163 Score = 188 bits (208), Expect = 7e-45 Identities = 244/337 (72%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 677 ATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTAAGAACAATACTTGG 736 || ||||| || | || || ||||| ||||| ||||| |||||| | ||| Sbjct 58081258 ATGAATGACGCTTTAGTCCAGGGTCTACTTGATTGCATGGATGCGAAGAACTCCAAATGG 58081199 Query 737 CGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGTGGCTTCTAGATTGGCGT 796 |||||||| || || |||| || ||||| || || ||| | ||||| || || ||| | Sbjct 58081198 CGTACTGTCCCGCTACCCCACGAGACACTTGGACGTCCATTCTGGCTCCTGGACTGGAGG 58081139 Query 797 CAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCTCTAAAGAAGATCTAATC 856 | ||||| ||||| || ||||| || |||||| |||||||| ||||| || || || Sbjct 58081138 CTGAATCAGGCTTATGCTTGGTTCCCGCAAGAAGGTCACTTCTCCAAAGAGGACCTCATT 58081079 Query 857 GCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCCCTCGCGACGTTGATGAT 916 || ||||| || |||||||| ||||| |||||||||| || || |||| || || ||| Sbjct 58081078 GCTGCCCAAATCCTTGGAATTCCCTGCACTCCAAGACTTGGTCCATGCGAAGTAGACGAT 58081019 Query 917 TGGCAATTCTTTCCAGGAAATGTCATGCCACAACATATCAATATCGCCGCTTATGAAAGA 976 |||||||||||| |||| |||| | | || || ||||| |||| ||| |||| Sbjct 58081018 TGGCAATTCTTTGCAGGCAATGCCCTCCCTGCCCAACTCAATGTCGCAAATTACAAAAGG 58080959 Query 977 GCAATTCCTCGACGATTCTTCGGAGCAGCAGAGTATC 1013 || | ||| || || || | ||| || || ||||||| Sbjct 58080958 GCCACTCCCCGCCGCTTTTACGGCGCTGCTGAGTATC 58080922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4662348777708