Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= NC_017988.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value seq10167 172 5e-40 seq2863 120 3e-24 >seq10167 Length=61252 Score = 172 bits (190), Expect = 5e-40 Identities = 358/521 (69%), Gaps = 24/521 (5%) Strand=Plus/Plus Query 433 CTGGGATCTTTACGTCTCGATCCGAGAATCAGTTAAGAAGCTATCACAAACAGCGTTCCT 492 ||||||||| ||||| || | ||| ||||| ||| ||||| ||| | | || || Sbjct 23273 CTGGGATCTATACGTTTCAAACCGTGAATCTATTATCAAGCTCTCAAGACCTGCACAACT 23332 Query 493 CCAACAATACCAAACAGAACAATTCCACAGCCAGGACCGCTACGACCCATTCCTCCAGCA 552 || || ||| ||| || | | || || || | || || ||||| || || || Sbjct 23333 ACAGCATTACAGCTTAGAGCAGTACTTCACTCAAGATTGTTATGATCCATTTCTGCACCA 23392 Query 553 TCTTAACACCGTCATCCGACCTACACACATCCCC--GGTGGTTTAGAAGATTCACTCTAT 610 ||| | ||||| ||| ||||| |||| || | |||||| | || || Sbjct 23393 TCTCCTATCTGTCATTAAACCAACACA--TCCCTTTGGAACCATTGAAGATGCTCTTTAC 23450 Query 611 ATCCCACTTATT--GCTAACCACGTGCAATGGGGAAACCAAAGC----CCATTCGGCATT 664 ||||| |||| | || ||| || | |||| || | || || ||||| |||||| Sbjct 23451 ATCCC-CTTACTCAGC-AACAACAT-CAATTTTGACAATAAGGCTAACCCATTTGGCATT 23507 Query 665 AACCATT--ATGCCATAAATGAATCTCTGGTACAAGGTCTCCTTGACGTTATGGACCTTA 722 ||| ||| ||| || |||||| || | || | |||||| ||| || |||||| | Sbjct 23508 AACAATTTCATG--ATGAATGAAGCTTTAGTTCGAGGTCTACTTAACTGCATGGAC---A 23562 Query 723 AGAACAAT---ACTTGGCGTACTGTTCCTCTGTCCCATGACACACTAGGCCGCCCAATGT 779 | |||| | ||| ||||| || || | | || ||| ||||||| ||| | | Sbjct 23563 CCAGCAATTTGAGATGGTACACTGTCCCACTACCGAACGAGACATTAGGCCGTCCATTTT 23622 Query 780 GGCTTCTAGATTGGCGTCAAAATCAAGCTTACGCCTGGTTTCCACAAGAAAACCACTTCT 839 |||| ||||||||| | | | |||||||||| ||||||||||||||| |||||| Sbjct 23623 GGCTCCTAGATTGGAAACGAGACAAAGCTTACGCATGGTTTCCACAAGAAGGAAACTTCT 23682 Query 840 CTAAAGAAGATCTAATCGCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGACTAGGCC 899 |||||||||| || || || ||||| || ||||| || ||||| | |||||||| ||| Sbjct 23683 CTAAAGAAGACCTCATTGCAGCCCAAATCCTTGGGATTCCCTGCACCCCAAGACT-CGCC 23741 Query 900 CTCGCGACGTTGATGATTGGCAATTCTTTCCAGGAAATGTC 940 | || || || ||||| |||||||||||| | || |||||| Sbjct 23742 CCCGAGATGTAGATGACTGGCAATTCTTTGCTGGTAATGTC 23782 >seq2863 Length=150212 Score = 120 bits (132), Expect = 3e-24 Identities = 154/206 (75%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 652 CCCATTCGGCATTAACCATT--ATGCCATAAATGAATCTCTGGTACAAGGTCTCCTTGAC 709 |||||||||||||||| | | ||| || || | | || | || |||||||| |||||| Sbjct 14864 CCCATTCGGCATTAACAAATTCATG--ATGAACGCAGCTTTAGTTCAAGGTCTACTTGAC 14807 Query 710 GTTATGGACCTTA-AGAACAAT--ACTTGGCGTACTGTTCCTCTGTCCCATGACACACTA 766 ||||| | | |||| ||| | ||||| ||||| || || | || | ||| || Sbjct 14806 TGCATGGA--TGACAGAA-AATCGAAATGGCGCACTGTCCCGCTACCGCACAAGACATTA 14750 Query 767 GGCCGCCCAATGTGGCTTCTAGATTGGCGTCAAAATCAAGCTTACGCCTGGTTTCCACAA 826 ||||| ||| | ||||| ||||||||| ||| | ||||||||||| ||| ||||||| Sbjct 14749 GGCCGTCCATTTTGGCTCCTAGATTGGAAACAAGACCAAGCTTACGCATGGAATCCACAA 14690 Query 827 GAAAACCACTTCTCTAAAGAAGATCT 852 ||| ||||| |||||||||||||| Sbjct 14689 GAAGGACACTTATCTAAAGAAGATCT 14664 Score = 78.8 bits (86), Expect = 9e-12 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 833 CACTTCTCTAAAGAAGATCTAATCGCCGCCCATATTCTTGGAATCCCCTGTTCTCCAAGA 892 |||||||||||||||||||| || || ||||| || ||||| || ||||| | | |||| Sbjct 14655 CACTTCTCTAAAGAAGATCTCATTGCTGCCCAAATCCTTGGGATTCCCTGCACCCTAAGA 14596 Query 893 CTAGGCCCTCGCGACGTTGATGATTGGCAA 922 || || || || || |||||||| || ||| Sbjct 14595 CTCGGGCC-CGAGATGTTGATGACTGCCAA 14567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4658561399456