Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009519.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value seq123764 89.7 6e-15 >seq123764 Length=49540 Score = 89.7 bits (98), Expect = 6e-15 Identities = 99/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 1044 AAGATAGCCGCACCCAATGGCAAGGTAT---ACCTTAAAACTTTAGGAATACCATCTGGT 1100 ||||| || | |||||| ||| |||| |||| |||||| ||| |||||||||||| Sbjct 381 AAGATTGCAGGACCCAA---CAAAGTATTGTACCTGAAAACTCAAGGCATACCATCTGGT 437 Query 1101 AGCTGTTTCACGAACATTATTGGAAGTATCGTTAACTACGTTCGCATCCAGTATCTGTTC 1160 ||||||||| | ||||| |||| || ||| |||| ||||| ||||| ||| ||||| Sbjct 438 AGCTGTTTCGCCAACATAGTTGGTAGCATCACGAACTTGGTTCGTATCCAATATATGTTC 497 Query 1161 TTCCGACTCAC 1171 ||||| || Sbjct 498 AATCGACTAAC 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5432342887200