Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_010346.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value seq123764 80.6 3e-12 >seq123764 Length=49540 Score = 80.6 bits (88), Expect = 3e-12 Identities = 113/157 (72%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1071 TACCTAAAGACTTTAGGCATACCATCCGGTAGTTGTTTTACCAACATCATTGGAAGCATC 1130 ||||| || ||| |||||||||||| ||||| ||||| ||||||| |||| |||||| Sbjct 408 TACCTGAAAACTCAAGGCATACCATCTGGTAGCTGTTTCGCCAACATAGTTGGTAGCATC 467 Query 1131 GTCAACTACGTCCGCATTCAGTATATGTTTTTCCGACTCACAAGAGAGTTCGTAACCGCG 1190 |||| || || || || |||||||| ||||| ||| | || |||| || Sbjct 468 ACGAACTTGGTTCGTATCCAATATATGTTCAATCGACTAACAGGGCAGCTCGTTTTAGCT 527 Query 1191 TTCACACACGG-AG---ACGACAGCCTCGTCGGAGTA 1223 | |||| | || || |||||||||| || | |||| Sbjct 528 TCCACAAATGGCAGGCAACGACAGCCTTGTGGCAGTA 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5480275324440