Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007242.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value seq6711 87.8 2e-14 >seq6711 Length=8069 Score = 87.8 bits (96), Expect = 2e-14 Identities = 263/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 322 TCCTGCTCTCCTGGAATTAGCTGCTGCTTATCCCATGTACACCGAGCAAC-GCCGTTCAT 380 ||||| | | || || |||| | | |||||| ||| | ||| | |||| | ||||| Sbjct 1110 TCCTGTTTTGCTCGACGGAGCTACAGATTATCCGATGCATACC-ATCAACCGTCGTTCTC 1168 Query 381 TCAACTTTTTCATCCCAGACTCCCAAATGATGTTTCACTCTTTAG-GTATCTGCGACTCA 439 ||||| |||||||| ||| ||| |||||||| || | | | || | || || ||| Sbjct 1169 CAAACTTGTTCATCCCTGACAGCCAGATGATGTT-CAATATGCTGAGTGTTTGTGA-TCA 1226 Query 440 -ATGATGAACTCCACCGATCGTTTTCTTCGATCCTCACCC-GCTTGGCTCCCCATCGTTT 497 ||||||| || || || | ||||| || || |||| | ||| | || || || | Sbjct 1227 TATGATGATATCTACTGAA-GAATTCTTAAATTCTAACCCTGGGTGGATACCAATTGTCT 1285 Query 498 CACAACTTTACATCTCTGTACTGTGGAATGTTATGATTATCCGCATCCTCTCTCACACTG 557 |||| || ||| ||||||| | ||| ||| ||| || | || | || | || Sbjct 1286 CACAGCTCTACGTCTCTGTTTTATGGGTCGTTCATATTCTCAGAGTCTTTGCTAAATATG 1345 Query 558 GATATGCCCCTTCCTTCACCGATCTACTCAATACTCTCACTACTGACCTTCAAATT-GAA 616 |||||| | ||| | || ||||||| | | | |||| || || || Sbjct 1346 GATATGGAGGAGCTATCATCCATA-ACTCAATTCG-TGATTACTTTG--TCGGATACGAG 1401 Query 617 GAGTGTATGGTCCCCGGACCACTAGTCCCCTTCTTCCAATCCTTGGCCTCTACCAATGGC 676 ||||||||| | || || || || || || ||||| |||||| | ||| | ||| ||| Sbjct 1402 GAGTGTATGATTCCGGGTCCTCTCGTTCCTTTCTTTCAATCCATCGCCGCCGTCAAGGGC 1461 Query 677 CCTTTTGACTGGATAGGCGATATCACTCC 705 |||||||||||||| ||||||||| |||| Sbjct 1462 CCTTTTGACTGGATCGGCGATATC-CTCC 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532020393700