Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022615.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value seq6711 167 3e-38 >seq6711 Length=8069 Score = 167 bits (184), Expect = 3e-38 Identities = 279/390 (72%), Gaps = 15/390 (4%) Strand=Plus/Plus Query 322 TCCTGCTTTGCTCGAGCTCGCTGCCGCAACTCCTATGTACACGGAACAAC-GCCGTGCTA 380 ||||| ||||||||| ||| | | ||| ||| | || | |||| | ||| || Sbjct 1110 TCCTGTTTTGCTCGACGGAGCTACAGATTATCCGATGCATACC-ATCAACCGTCGTTCTC 1168 Query 381 CAAACTTCTTTGTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCAAA 440 ||||||| || |||||||| |||||| | ||| || |||||||| ||||||| || | Sbjct 1169 CAAACTTGTTCATCCCTGACAGCCAGATGATGTTCAATATGCTGAGTGTTTGTGATCATA 1228 Query 441 TGATGAACTCTACTGAACGATTTCTTCG-TTCTTCTCCTGCCTGGATGCCCATTGTCTCA 499 |||||| ||||||||| || ||||| |||| |||| ||||| || ||||||||| Sbjct 1229 TGATGATATCTACTGAA-GAATTCTTAAATTCTAACCCTGGGTGGATACCAATTGTCTCA 1287 Query 500 CAGCTCTACATTTCAGTTCTCTGGAATG-TCATGATTCTCAATGTTTTTGTCAACTCTGG 558 ||||||||| | || ||| | ||| | |||| ||||||| || |||| || | ||| Sbjct 1288 CAGCTCTACGTCTCTGTTTTATGGGTCGTTCAT-ATTCTCAGAGTCTTTGCTAAATATGG 1346 Query 559 CTATGGCTCCGCCTTTTCTTCGTTCCTATCTGAA--CTTTATGGCGTCCTCCGGAT-CGA 615 ||||| || | || || | || || || | | || | | | ||||| ||| Sbjct 1347 ATATGGAGGAGC--TATCATC---CATAACTCAATTCGTGATTACTTTGT-CGGATACGA 1400 Query 616 CGAATGCATGATCCCCGGACCACTCGTCCCCTTCTTCCAAGCTTTGGCCGCCGTCAATGG 675 || || ||||| || || || ||||| || ||||| ||| | | ||||||||||| || Sbjct 1401 GGAGTGTATGATTCCGGGTCCTCTCGTTCCTTTCTTTCAATCCATCGCCGCCGTCAAGGG 1460 Query 676 CCCCTTTGACTGGATTGGAGACATCGTCCC 705 ||| ||||||||||| || || ||| |||| Sbjct 1461 CCCTTTTGACTGGATCGGCGATATCCTCCC 1490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5715892704780