Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022617.1 Length=1710 Score E Sequences producing significant alignments: (Bits) Value seq6711 93.3 4e-16 >seq6711 Length=8069 Score = 93.3 bits (102), Expect = 4e-16 Identities = 243/355 (68%), Gaps = 13/355 (4%) Strand=Plus/Plus Query 291 TACCCGATGTATACTGAACAAC-GTCGTGGTGTTAACTTCTTTGTCCCTGACTCCCAAAT 349 || |||||| |||| | |||| ||||| | ||||| || |||||||| ||| || Sbjct 1138 TATCCGATGCATACC-ATCAACCGTCGTTCTCCAAACTTGTTCATCCCTGACAGCCAGAT 1196 Query 350 GCTCTTTCACGTTTTGGGTATGTGTGACCAAATGATGAACTCTACTGACCGATTTCTTAG 409 | | || | | || || | ||||| || ||||||| |||||||| || |||||| Sbjct 1197 GATGTTCAATATGCTGAGTGTTTGTGATCATATGATGATATCTACTGAA-GAATTCTTAA 1255 Query 410 GTCCTC-CCCTGCTTGGCTCCCTATCGTCTCCCAGCTTTACATAGCTGTTCTCTGGAATG 468 | || ||||| ||| | || || ||||| ||||| ||| | ||||| | ||| | Sbjct 1256 ATTCTAACCCTGGGTGGATACCAATTGTCTCACAGCTCTACGTCTCTGTTTTATGGGTCG 1315 Query 469 TT-ATGATCTGCC-GTGTTTACATAAACACTGGCTATGCTAGCCATCTAGCTCCCATCA- 525 || || ||| || ||| | |||| | ||| |||| | | ||| | |||| | Sbjct 1316 TTCATATTCTCAGAGTCTTTGC-TAAATA-TGGATATGGAGG--AGCTATCATCCATAAC 1371 Query 526 TCGATGTTCTCATCTCTCATCTGCAAATCCATGAATGCATGATCCCTGGACCTTTAGTTC 585 || || | | || || | | | | | || || ||||| || || ||| | |||| Sbjct 1372 TCAAT-TCGTGATTACTTTGTCGGATA-CGAGGAGTGTATGATTCCGGGTCCTCTCGTTC 1429 Query 586 CTTTCTTTCAATCCCTTGCTGCCGTAAATGGCCCTTTTGACTGGATAGGTGACAT 640 |||||||||||||| | || ||||| || ||||||||||||||||| || || || Sbjct 1430 CTTTCTTTCAATCCATCGCCGCCGTCAAGGGCCCTTTTGACTGGATCGGCGATAT 1484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5313275747760