Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_030245.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value seq659 89.7 5e-15 seq14 84.2 2e-13 seq12 84.2 2e-13 seq1185 80.6 3e-12 >seq659 Length=2426902 Score = 89.7 bits (98), Expect = 5e-15 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 781 TGGCTTTTCGACTGGCATGACGA-TGATCGAGTCT-GTGCTTGGTTCCCAATGGAAGGGA 838 ||||| |||||||||| || || || ||||| | |||||||||| || ||||| | Sbjct 2207671 TGGCTACTCGACTGGCACGAGGACTG--CGAGTGTTGTGCTTGGTTTCCTCGCGAAGGAA 2207728 Query 839 ATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAAC 898 | | ||| ||||| ||||||| | || ||||| || |||| ||||||||||| || | Sbjct 2207729 ACTACACGATGGAGGATGTCATGGTTGCCTATATACTCGGAGCTGCCTGTACTCCCAATC 2207788 Query 899 TCGCCCCATGCGATGTTGATGATTGGCAATAC 930 | | | |||||||||||||||||| || Sbjct 2207789 TTGGATTCAGAGATGTTGATGATTGGCAAAAC 2207820 >seq14 Length=29158859 Score = 84.2 bits (92), Expect = 2e-13 Identities = 111/152 (73%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 781 TGGCTTTTCGACTGGCATGACGA-TGATCGAGTCT-GTGCTTGGTTCCCAATGGAAGGGA 838 || || |||||||||| || || || ||||| | || ||||||| || ||||| | Sbjct 26870548 TGRCTACTCGACTGGCACGAGGACTG--CGAGTGTTGTKCTTGGTTTCCTCGCGAAGGAA 26870491 Query 839 ATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAAC 898 | | ||| ||||| ||||||| | || ||||| || |||| ||||||||||| || | Sbjct 26870490 ACTACACGATGGAGGATGTCATGGTTGCCTATATACTCGGAGCTGCCTGTACTCCCAATC 26870431 Query 899 TCGCCCCATGCGATGTTGATGATTGGCAATAC 930 | | | |||||||||||||||||| || Sbjct 26870430 TTGGATTCAGAGATGTTGATGATTGGCAAAAC 26870399 >seq12 Length=31678690 Score = 84.2 bits (92), Expect = 2e-13 Identities = 111/152 (73%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 781 TGGCTTTTCGACTGGCATGACGA-TGATCGAGTCT-GTGCTTGGTTCCCAATGGAAGGGA 838 || || |||||||||| || || || ||||| | || ||||||| || ||||| | Sbjct 10438897 TGRCTACTCGACTGGCACGAGGACTG--CGAGTGTTGTKCTTGGTTTCCTCGCGAAGGAA 10438954 Query 839 ATTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAAC 898 | | ||| ||||| ||||||| | || ||||| || |||| ||||||||||| || | Sbjct 10438955 ACTACACGATGGAGGATGTCATGGTTGCCTATATACTCGGAGCTGCCTGTACTCCCAATC 10439014 Query 899 TCGCCCCATGCGATGTTGATGATTGGCAATAC 930 | | | |||||||||||||||||| || Sbjct 10439015 TTGGATTCAGAGATGTTGATGATTGGCAAAAC 10439046 >seq1185 Length=2433339 Score = 80.6 bits (88), Expect = 3e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 788 TCGACTGGCATGACGA-TGATCGAGTCT-GTGCTTGGTTCCCAATGGAAGGGAATTTCAC 845 |||||||||| || || || ||||| | || ||||||| || ||||| || | ||| Sbjct 1453666 TCGACTGGCACGAGGACTG--CGAGTGTTGTTCTTGGTTTCCTCGCGAAGGAAACTACAC 1453723 Query 846 AATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAACTCGCCCC 905 ||||| ||||||| | || ||||| || |||| ||||||||||| || || | Sbjct 1453724 GATGGAGGATGTCATGGTTGCCTATATACTCGGAGCTGCCTGTACTCCCAATCTTGGATT 1453783 Query 906 ATGCGATGTTGATGATTGGCAATAC 930 | |||||||||||||||||| || Sbjct 1453784 CAGAGATGTTGATGATTGGCAAAAC 1453808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4806336113932