Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_034167.1 Length=1525 Score E Sequences producing significant alignments: (Bits) Value seq255396 143 3e-31 >seq255396 Length=5629 Score = 143 bits (158), Expect = 3e-31 Identities = 385/577 (67%), Gaps = 30/577 (5%) Strand=Plus/Plus Query 403 CAATGGGAAAACGCAGCCCACGCGTATATCTCATGCTGGTTCTTTGACCTTTACGTTTCT 462 ||||||||| | | ||| | || ||| | || |||||||| | |||||| || || ||| Sbjct 4085 CAATGGGAATATGGTGCCAAAGCATATGTTTCCTGCTGGTTTTATGACCTCTATGTATCT 4144 Query 463 GTCAGAAACGCTGTTGAAAAGGTCTCAGGTACTGCATTTACACAGTACTATCATGCACAC 522 | || || || || || ||||| || | ||||| || |||| || | | Sbjct 4145 AATCGTAAAGCCGTCGAGAAAGTCTCCGGCTCAGCATTCGTTCAACACTACCACTCTCCT 4204 Query 523 GCAGCTCACATTTTGCATGAATATGATGCACTTCTT-GTTCACTTGAATGCTATCATTCG 581 ||||| ||||| | || ||||||||||| ||||| ||||| |||||||| |||||||| Sbjct 4205 GCAGCCCACATATCTGATAAATATGATGCA-TTCTTGGTTCATTTGAATGCGATCATTCG 4263 Query 582 CCCCACTCATATCAAACTCGC---ACTCGAAGATTGTATATACATACCGAGGATTGCAAC 638 ||| |||||||||| ||| || ||| ||||| || | || || |||| || | Sbjct 4264 CCCTACTCATATCACACTAGCACTACTTGAAGACACCATGTGGATTCCTCTGATTTCATC 4323 Query 639 AAATATGAATATCACCAACCCTAACCCCTTCGGCCTC--ACAGAAGCTACATGGGAT--- 693 ||| ||||| |||||| | ||| ||| || | || ||||| | || |||||| Sbjct 4324 AAACATGAACATCACCGCCGCTAGCCCATTTGTAATCGATCAGAA-CAAC-TGGGATTTG 4381 Query 694 --AGAGATGCT-GACTTTGCT-TATTCGAT--CATGGATCGTATGAAAGCACCGGGCTCC 747 || | || | | |||| | ||||| ||| | | || ||| || Sbjct 4382 AACGAAAGTCTCGCCCATGCTCTGCTCGATAAAATGCAGC-AATCAAA--------TTCG 4432 Query 748 AGATGGAGAGTTGAGCCCCTAGTTACCGAC---ACTCTCGGCAGACCAGGATGGTTACTC 804 | |||| |||||| |||| || ||||| ||||| || ||||| | ||| || | Sbjct 4433 AATTGGAAAGTTGAAACCCTTGTCTCCGACAGTACTCTAGGTAGACCTGCGTGGCTATTA 4492 Query 805 GACTGGCACCAGGTAGGCGCACAACAACAAGCATATGCTTGGTTTCCTTCAGAAGGCAAC 864 || ||||| | ||| | | |||||| ||||||||| ||| || ||||| Sbjct 4493 GATTGGCATGGTGAAGGAAGAGATGCGAAAGCATTTGCTTGGTTCCCTAAAGGGTGCAAC 4552 Query 865 TACTCTATGGAGGATTTGATTGCACCACACATAATTGGAGAGGCACTTACTCCACTTATG 924 ||||| | || | ||||| | ||||| ||||| ||||| ||| ||| | Sbjct 4553 TACTCCACAATTGACCTCATTGCTGCCCACATCATTGGTGAGGCTTGTACACCAAACCTC 4612 Query 925 GGCCCTTGCGACATTGATGATTGGCAATACTTTCCAA 961 ||||| | || |||||||||||||||||| ||||| Sbjct 4613 GGCCCACGTGATGTTGATGATTGGCAATACTATCCAA 4649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4724074502742