Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_034167.1 Length=1525 Score E Sequences producing significant alignments: (Bits) Value seq189204 109 5e-21 >seq189204 Length=106479 Score = 109 bits (120), Expect = 5e-21 Identities = 276/414 (67%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 554 TTCTTG-TTCACTTGAATGCTATCATTCGCCCCACTCATATCAAACTCGCACTCGAAGAT 612 |||||| |||| ||||||| || |||||||| |||| ||||| ||| ||||| ||||| Sbjct 31200 TTCTTGGTTCATTTGAATGGGATTATTCGCCCTACTCGTATCAGACTAGCACTAGAAGAC 31141 Query 613 TGTATATACATACCGAGGATTGCAACAAATATGAATATCACCAACCCTAACCCCTTCGGC 672 || | || || |||| || |||| ||||| |||||| | ||| || || || Sbjct 31140 ACCATGTGGATTCCTCTGATTTCATCAAACATGAACATCACCGCCGCTAGTCCATTTGGA 31081 Query 673 CTCA--CAGAAGCTACATGGGATAGAGATGCTGACTTTGCTTATTCGATCATGGATCGTA 730 | ||||| | || |||||| | | | || | ||| | | ||| | Sbjct 31080 ATTGATCAGAA-CAAC-TGGGATCTTAACGAAAGTCTCGCCTTTTCTCTGCTTGATAAAA 31023 Query 731 TGAAAGCACCGGGCTCCAGATGGAGAGTTGAGCCCCTAGTTACCGACA---CTCTCGGCA 787 || | | | || | |||| |||||| |||| || |||||| |||| || | Sbjct 31022 TGCAGCAATCAAATTCGAATTGGAAAGTTGAAACCCTTGTCTCCGACAGTACTCTAGGTA 30963 Query 788 GACCAGGATGGTTACTCGACTGGCACCAGGTAGGCGCACAACAACAAGCATATGCTTGGT 847 |||| | ||| || | || ||||| | |||| | | |||||| | |||||| Sbjct 30962 GACCTGCGTGGCTATTAGATTGGCATGGTGAAGGCAGAGATGCGAAAGCATTTTCTTGGT 30903 Query 848 TTCCTTCAGAAGGCAACTACTCTATGGAGGATTTGATTGCACCACACATAATTGGAGAGG 907 | ||| ||| |||||||||||| || | |||||| | ||||| ||||| |||| Sbjct 30902 TCCCTAAAGAGAGCAACTACTCTACAATTGACCTCATTGCAGCCCACATCATTGGTGAGG 30843 Query 908 CACTTACTCCACTTATGGGCCCTTGCGACATTGATGATTGGCAATACTTTCCAA 961 | ||| ||| | ||||| || ||| |||||||||||||||||| ||||| Sbjct 30842 CTTGTACACCAAGCCTCGGCCCATGTGACGTTGATGATTGGCAATACTATCCAA 30789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4758327880908