Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_008190.1 Length=1791 Score E Sequences producing significant alignments: (Bits) Value seq12073 100 3e-18 >seq12073 Length=6201 Score = 100 bits (110), Expect = 3e-18 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 410 CTTCTACTATCTCAACAAGATGGACTCCTTGATGGTCCAAACTCTCAAC--TGGACAAAC 467 |||||||||||||||| | |||||| | ||||| | || | ||| ||||| || Sbjct 5069 CTTCTACTATCTCAACTATATGGACCACCTGATGA--CGTACACAGAACGATGGACCAAT 5012 Query 468 AACTGCTCTGGATGGGTTCCCCCATACTCCCAGATCTACATCAGCATGCTTCTCTATCTT 527 |||||| || ||||| || || | ||| |||||||||||||||||||||||||| || Sbjct 5011 AACTGCATGGGCTGGGTACCTCCTTTCTCTCAGATCTACATCAGCATGCTTCTCTACATT 4952 Query 528 CAAGTAATGCGCGCCATG 545 ||| ||||| |||||| Sbjct 4951 CAAACCATGCGAGCCATG 4934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618533039784