Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_008190.1 Length=1791 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-15 >seq2 Length=43799612 Score = 91.5 bits (100), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 410 CTTCTACTATCTCAACAAGATGGACTCCTTGATGGTCCAAACTCTCAAC--TGGACAAAC 467 ||||||||||||||| |||||| | ||||| | || | ||| ||||| || Sbjct 21513420 CTTCTACTATCTCAATTGTATGGACCACATGATGA--CGTACACAGAACGATGGACCAAT 21513363 Query 468 AACTGCTCTGGATGGGTTCCCCCATACTCCCAGATCTACATCAGCATGCTTCTCTATCTT 527 |||||| || ||||| || || | ||| |||||||||||||||||||||||||| || Sbjct 21513362 AACTGCATGGGCTGGGTACCTCCTTTCTCTCAGATCTACATCAGCATGCTTCTCTACATT 21513303 Query 528 CAAGTAATGCGCGCCATG 545 ||| ||||| |||||| Sbjct 21513302 CAAACCATGCGAGCCATG 21513285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5621762237112