Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_009519.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value seq683 235 6e-59 >seq683 Length=104906 Score = 235 bits (260), Expect = 6e-59 Identities = 369/524 (70%), Gaps = 23/524 (4%) Strand=Plus/Minus Query 639 GACTACGGTCCGCTAGCTCTCGAAGACTCTACACCTGACATAGCGTT-CACACGAACACA 697 ||||| | || | |||||| |||||||||||||||||||| || || | | ||| | || Sbjct 98323 GACTATGCTCGACGAGCTCTTGAAGACTCTACACCTGACATGGCTTTTCTCTCGAGCTCA 98264 Query 698 ACTATGCCAAATCAAGGTGAAGAGAAAGATTAGGAATGTTTGGGGAGAGGCGTTTCATTA 757 ||| ||||||| || || ||||||||| | | | ||||||||||| || |||||||| Sbjct 98263 GCTAAGCCAAATGAAAGTTAAGAGAAAGGTCAAGCCCGTTTGGGGAGAAGCATTTCATTA 98204 Query 758 CGTCCTACTTGAAGGTCTGTTCGCAGATCCCATTATTCAGCACTTTAT---------ACG 808 | || | ||||| ||||| || || |||||| | || ||| | | | Sbjct 98203 TGCTCTTTTAGAAGGACTGTTTGCTGA-CCCATTGATACGCCATTTCTTGCAGACTAATG 98145 Query 809 --GAACAAG--TCGTTCTACTTTATTGGAGAAGACCCGCTGCTTGCTGTCCCCCGCCTAG 864 || |||| || ||||||| |||||| | || |||||| || || | Sbjct 98144 ATGATCAAGATTCATTCTACTGTATTGGTCATATGCC----CTTGCTATCACCTCCAGGC 98089 Query 865 TCGAGAAG----ATATTATCAGAACAAGACTACGTCTACATGTTTGACTGGTCTGGTTTC 920 || ||| | |||| || || ||||||||||||||||| || ||| | | || Sbjct 98088 TCTGTAAGTAGCAAATTACATGATCACGACTACGTCTACATGTTAGATTGGACCGACTTT 98029 Query 921 GATGCCTCAGTACAAGAATGGGAAATTCGTTTTGCCTTTTCGTTACTTGAGAGTATCCTG 980 || || ||||| ||||||||||| || ||||| |||||| | ||||||||| | || Sbjct 98028 GAGGCTTCAGTCCAAGAATGGGAGATCCGTTTCGCCTTTGAGCTACTTGAGACGTTATTG 97969 Query 981 ATCTTTCCCTCAAGTGTCGAATCTTACATTTGGCATTTCATTATTGAGCTGTTCATCTAC 1040 || ||||| || ||| || | | ||||||||| |||||| ||||| ||||||||||| Sbjct 97968 ATATTTCCATCGCATGTTGATTTTCACATTTGGCGGTTCATTGTTGAGTTGTTCATCTAC 97909 Query 1041 CGCAAGATAGCCGCACCCAATGGCAAGGTATACCTTAAAACTTTAGGAATACCATCTGGT 1100 | ||||| | | | || || || | || ||| | ||||| ||||||||||| ||| Sbjct 97908 AGAAAGATTGTCACCCCGAACGGAGACGTGTACTTAAAAACACAAGGAATACCATTCGGT 97849 Query 1101 AGCTGTTTCACGAACATTATTGGAAGTATCGTTAACTACGTTCG 1144 || || || || | |||||| ||||| ||| ||||| ||||| Sbjct 97848 AGTTGCTTTACAACCATTATCGGAAGCATCACGAACTATGTTCG 97805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5422204998400