Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_010343.1 Length=1717 Score E Sequences producing significant alignments: (Bits) Value seq683 150 2e-33 >seq683 Length=104906 Score = 150 bits (166), Expect = 2e-33 Identities = 354/528 (67%), Gaps = 25/528 (5%) Strand=Plus/Minus Query 649 AGCTATTAACCAGTCTACACCTGACGTTGCTTTTA-CAAGAACGCAACTCTCTCAAGTCA 707 |||| || | | |||||||||||| | |||||| | || | || || ||| | | Sbjct 98309 AGCTCTTGAAGACTCTACACCTGACATGGCTTTTCTCTCGAGCTCAGCTAAGCCAAATGA 98250 Query 708 AAGTGAAGACCAAGGTTAGAAATGTATGGGGTGAAGCGTTTCATTACGTTTTGCTGGAAG 767 |||| |||| ||||| | || ||||| ||||| |||||||| | | | | |||| Sbjct 98249 AAGTTAAGAGAAAGGTCAAGCCCGTTTGGGGAGAAGCATTTCATTATGCTCTTTTAGAAG 98190 Query 768 GCCTTTTTGCCGACCCATTGAT---CAACTTCTTCT---CCAACGA------AGAATCTT 815 | || ||||| ||||||||||| | | ||||| | || || ||| || | Sbjct 98189 GACTGTTTGCTGACCCATTGATACGCCATTTCTTGCAGACTAATGATGATCAAGATTCAT 98130 Query 816 TCTACTTTATAGGAAGAAATCCGTTGCTCAGTGTACCTACA-----TTAATCGAGGAAAT 870 |||||| ||| || | || ||||| |||| || | | || |||| Sbjct 98129 TCTACTGTATTGGTCATATGCCCTTGCTATC---ACCTCCAGGCTCTGTAAGTAGCAAAT 98073 Query 871 CTTCAA-ATCCAAGGACTACGTATATGCGTTCGATTGGTCCGGGTTTGATGCCTCCGTTC 929 | || ||| | |||||||| || ||| |||||| ||| ||||| || || || | Sbjct 98072 -TACATGATC--ACGACTACGTCTACATGTTAGATTGGACCGACTTTGAGGCTTCAGTCC 98016 Query 930 AAGAATGGGAAATCCGTTTCGCCTTTCAATGTCTGGAGTCACAGCTGATATTTCCTTCAA 989 |||||||||| ||||||||||||||| | || ||| | |||||||||| || Sbjct 98015 AAGAATGGGAGATCCGTTTCGCCTTTGAGCTACTTGAGACGTTATTGATATTTCCATCGC 97956 Query 990 ATGTCGAAGCCCAGATCTGGCGTTTCATCGTTGAGCTGTTCATCTACCGGAAGATTGCCG 1049 |||| || || || ||||| ||||| |||||| ||||||||||| | ||||||| | Sbjct 97955 ATGTTGATTTTCACATTTGGCGGTTCATTGTTGAGTTGTTCATCTACAGAAAGATTGTCA 97896 Query 1050 CCCCAAACGGCACCCTATTTCTGAAGACCTTAGGTATCCCCTCTGGTAGCTGTTTTACCA 1109 |||| ||||| | | | | || || ||| || || | ||||| || ||||| | Sbjct 97895 CCCCGAACGGAGACGTGTACTTAAAAACACAAGGAATACCATTCGGTAGTTGCTTTACAA 97836 Query 1110 ACATGATTGGTAGCGTCGTCAACTACGTCCGCATCCAATACATGTTCA 1157 ||| || || ||| || ||||| || || | |||||| | |||| Sbjct 97835 CCATTATCGGAAGCATCACGAACTATGTTCGTGTTCAATACTTATTCA 97788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5367982948416