Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_010346.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value seq683 242 4e-61 >seq683 Length=104906 Score = 242 bits (268), Expect = 4e-61 Identities = 457/670 (68%), Gaps = 39/670 (6%) Strand=Plus/Minus Query 634 ACCGAGACTACGGTCCACTAGCTCTAGAAGACTCTACACCCGATGTAGCTTT-CACCAGA 692 ||| |||||| | || || |||||| |||||||||||||| || | ||||| | | || Sbjct 98328 ACCAAGACTATGCTCGACGAGCTCTTGAAGACTCTACACCTGACATGGCTTTTCTCTCGA 98269 Query 693 ACACAGCTATGTCAGATTAAGGTGAAGAGAAAAATTAGGAATGTTTGGGGTGAAGCGTTT 752 | |||||| | || || || || |||||||| | | | |||||||| ||||| ||| Sbjct 98268 GCTCAGCTAAGCCAAATGAAAGTTAAGAGAAAGGTCAAGCCCGTTTGGGGAGAAGCATTT 98209 Query 753 CATTACGTCCTACTAGAAGGTCTGTTCGCAGATCCACTTATCCAGCAATTCATGCGCATT 812 ||||| | || ||||||| ||||| || || ||| | || | || ||| ||| | | Sbjct 98208 CATTATGCTCTTTTAGAAGGACTGTTTGCTGACCCATTGATACGCCATTTCTTGCAGACT 98149 Query 813 AAA------------TCATTCTACTTTATTGGAGAAGATCCGCTACTTGCTGTCCCCCGC 860 || |||||||||| |||||| | || |||||| || || | Sbjct 98148 AATGATGATCAAGATTCATTCTACTGTATTGGTCATATGCC----CTTGCTATCACCTCC 98093 Query 861 CTAATCG------AGGAGATTCTATCCGAGCAAGACTACATCTACATGTTTGATTGGTCT 914 || || | ||| || || || |||||| |||||||||| |||||| | Sbjct 98092 AGGCTCTGTAAGTAGCAAATTACAT--GATCACGACTACGTCTACATGTTAGATTGGACC 98035 Query 915 GGCTTTGATGCCTCAGTACAAGAATGGGAACTACGTTTTGCCTTCGGCCTACTCGAGAGT 974 | |||||| || ||||| ||||||||||| | ||||| ||||| | ||||| |||| Sbjct 98034 GACTTTGAGGCTTCAGTCCAAGAATGGGAGATCCGTTTCGCCTTTGAGCTACTTGAGACG 97975 Query 975 ATCTTAATCTTCCCGTCGAGTGTCGAACATCAAGTTTGGCAATTCATTATTGAGCTGTTC 1034 | || || || || ||| ||| || ||| |||||| |||||| ||||| ||||| Sbjct 97974 TTATTGATATTTCCATCGCATGTTGATTTTCACATTTGGCGGTTCATTGTTGAGTTGTTC 97915 Query 1035 ATCTACCGAAAGATTGCCGCCCCAAATGGCAAGATATACCTAAAGACTTTAGGCATACCA 1094 |||||| ||||||||| | |||| || || | | ||| |||| || ||| |||||| Sbjct 97914 ATCTACAGAAAGATTGTCACCCCGAACGGAGACGTGTACTTAAAAACACAAGGAATACCA 97855 Query 1095 TCCGGTAGTTGTTTTACCAACATCATTGGAAGCATCGTCAACTACGTCCGCATTCAGTAT 1154 | ||||||||| ||||| | ||| || ||||||||| ||||| || || |||| || Sbjct 97854 TTCGGTAGTTGCTTTACAACCATTATCGGAAGCATCACGAACTATGTTCGTGTTCAATA- 97796 Query 1155 ATGTTTTTCCGACTCACAAGAGAGTTC----GTAACCGCGTTCACACACGGAGACGACAG 1210 || ||| | ||| | |||| | || | ||||| | || || ||||| Sbjct 97795 --CTTATTCATGCGTTGAAGTG-GTTCTTTGGCCACGGTTTTCACTGATGGGGATGACAG 97739 Query 1211 CCTCGTCGGAGTACCCACTACTCAATAC------GTTCAGATGGAAAACTTCAAACCCAT 1264 |||| ||||||| | |||||| ||| |||||| || ||||| ||||| Sbjct 97738 CCTCATCGGAGTTAAAGATGAGCAATACACTTCATTTCCGATGGACAATTTCAATCCCAT 97679 Query 1265 CTGCGATGAG 1274 ||||||||| Sbjct 97678 TTGCGATGAG 97669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5470047983680