Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_011557.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value seq66 87.8 2e-14 >seq66 Length=427072 Score = 87.8 bits (96), Expect = 2e-14 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 393 TTTGTCCCTGATGCTCAGATGCTATTCCATGTCCTTGGAATCTGTGATCAAATGATGCTT 452 || ||||| || ||||| ||||||||||||||||| |||||||| ||||| | ||| | Sbjct 356225 TTCGTCCCCGACGCTCAAATGCTATTCCATGTCCTCGGAATCTGCGATCAGCTAATGGTC 356284 Query 453 TCAACTGATCGCTTTACGCGTTCATCTCCTGCTTGGATCCCCATCGTCTCACAGCTTTAC 512 ||| | ||| || ||||||||| | ||| | || | ||||| ||||| ||| Sbjct 356285 AACACTCCCCAGTTTCTCCGATCATCTCCTTCCTGGCTTCCGGTTGTCTCGCAGCTCTAC 356344 Query 513 ATCTCTGTACTCTGGA 528 ||||| | ||||||| Sbjct 356345 ATCTCCCTCCTCTGGA 356360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5596397534112