Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_022615.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value seq66 84.2 3e-13 >seq66 Length=427072 Score = 84.2 bits (92), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 387 TCTTT-GTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCA---AATG 442 ||||| ||||| ||| |||| ||||| |||||||| || | || || || || |||| Sbjct 356222 TCTTTCGTCCCCGACGCTCAAATGCTATTCCATGTCCTCGGAATCTGCGATCAGCTAATG 356281 Query 443 ATGAACTCTACTGAACGATTTCTTCGTTCTTCTCCTGCCTGGATGCCCATTGTCTCACAG 502 | ||| || | | ||||| || || |||||| ||||| | || ||||||| ||| Sbjct 356282 GTCAACACTCCCCAG---TTTCTCCGATCATCTCCTTCCTGGCTTCCGGTTGTCTCGCAG 356338 Query 503 CTCTACATTTCAGTTCTCTGGAATGTCA 530 |||||||| || | ||||||||| ||| Sbjct 356339 CTCTACATCTCCCTCCTCTGGAATTTCA 356366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5769185108064