Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq412 147 2e-32 >seq412 Length=131873 Score = 147 bits (162), Expect = 2e-32 Identities = 383/568 (67%), Gaps = 27/568 (5%) Strand=Plus/Plus Query 964 GATCGTTGGATGGTTAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATG 1023 ||||||||| || || || ||| | |||||| |||||||||| || |||| || Sbjct 94077 GATCGTTGGTCTCTTGTGTCTCCTGGCTTACAGTATAACTGTGAAGCCAACCAGAAGTTG 94136 Query 1024 AATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAGATGAC 1083 || ||||| ||| ||||||| || | ||||||||| | | | || | || | | | Sbjct 94137 AACGAAGCATTCTCTGAACGCATCAA-GATTTTGACGT-CGTCCCC--ACTGCTGCTAGC 94192 Query 1084 AATCTCTCCACCA---TCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATC 1140 ||| || |||| || || ||||||||||||| |||| ||||||||||| | Sbjct 94193 AATAGCTTGACCAGTATCTCCTCTTTCCTCCACATGAAACAAAGCATGGCTTGGTTTACA 94252 Query 1141 CGGGCCAAGGAAGTCGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACTCTCGCC 1200 | | ||| |||| ||| ||| || || || |||| | || |||||||| || Sbjct 94253 CAAGTCAAA-AAGTTGCCATCTCTGCTGCCTCATACTTTAATGGATCCGGCACTCTTGCT 94311 Query 1201 GACTGTTCTCCACACGGT-CTGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCACC 1259 |||||||| || || || | | | | || | || || | ||| | ||| | ||| Sbjct 94312 GACTGTTCACCTCATGGCACAGCTGTTAACCAAG-TCGTGGTT----TGTCTCATTAACC 94366 Query 1260 TGAGGAGACTTTTGCTGATCCCC--GCTTCTCCGCCGATCCAAGAG--CCCTCTATCCCT 1315 || | || || | | | || | | ||| || ||| ||| | | |||||| | Sbjct 94367 CGAA-ACACCTTCCCGAAACTCCAAGATGCTCTGCTGAT--AAGTGGTCTCTCTATGAGT 94423 Query 1316 TCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAG 1375 || | || ||||||| ||||| || || |||||| | || || | |||| ||| || | Sbjct 94424 TCTGCTTTAAGCTGAGAAGCACTGCTCATAACCTCTCTCCTCTGGAGGAAACTGATGCCG 94483 Query 1376 CCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGGTC 1435 | | ||| ||||| ||||| |||| || | || | || | || || || ||| Sbjct 94484 CATACTCTCAGAC--ACATCAGGATGTTCTCTAAACATCCTTACCTCGCAAGTTTCGGTT 94541 Query 1436 AAAAGACCGACGAATCA--GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCAC 1493 |||||| | | ||| ||||||||||||||||||||||| |||||||| |||| | Sbjct 94542 CAAAGACAGCC--ATCGATGGCCCCTTTTGGGACATCAGGCCGATTGGCTCGAGCCTTAT 94599 Query 1494 CGACGACACCTCCTACCTCACCATCCCA 1521 |||||| ||||| | || | ||||||| Sbjct 94600 CGACGAGACCTCTTTCCACGGCATCCCA 94627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532402136352