Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_006276.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value seq72430 118 1e-23 seq68663 77.0 3e-11 >seq72430 Length=393 Score = 118 bits (130), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 589 ACCTTCAAATTAACGAATGTATGATCCCTGGCCCCCTCGTCCCCTTTTTCCAATCCCTCG 648 ||||||||||| | || |||||| |||| || || || |||||||| ||||||||| | | Sbjct 319 ACCTTCAAATTGAAGAGTGTATGGTCCCCGGACCACTAGTCCCCTTCTTCCAATCCTTGG 260 Query 649 CTGCCGTCAATGGCCCTTTTGACTGGATAGGTGATATTATTCCTGCCATGCCATCATTCA 708 | | ||||||||||||||||||||||||| ||||| | ||||||| | || ||| Sbjct 259 CCTCTATCAATGGCCCTTTTGACTGGATAGGCGATATCACTCCTGCCCTCCCTGGATTTG 200 Query 709 CTGAACTCTGGACTG--ATGAATTT-GCTCCCCATGCTGCTTACGCTAGGCAAATACCCA 765 | |||||| || | |||||| |||| || || ||| | | | |||| Sbjct 199 ATTCTCTCTGGGATGCCACGAATTTCACTCCGCACGCAAGCTACACCCGCTTCGTCCCCA 140 Query 766 TACCTGCCATCCTCCTTGATCAGCTTTAC 794 | ||||||||| | || || ||||||||| Sbjct 139 TTCCTGCCATCTTGCTAGACCAGCTTTAC 111 >seq68663 Length=225 Score = 77.0 bits (84), Expect = 3e-11 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1470 ACCCCTTTCCGCTACTCTCCTCCTGTCTCTCTGAAGACCCAGTTTGCTCAAGTGATCGCT 1529 ||||||||||| || | | | || || ||||| |||| ||| || | |||||| Sbjct 6 ACCCCTTTCCGTCACACCGGACATCTCGGCCTCAAGACTCAGTATGCCCAGCTCATCGCT 65 Query 1530 TCCCGCTACCACCAACAAGCTGCCAACCGTGCTGAATGA-TTCCTCC-GACCTTTGATGT 1587 || ||||| ||||||| || |||||||||| || ||| ||||| ||||| | || Sbjct 66 TCTCGCTATCACCAACTTGCCGCCAACCGTGTCGACTGACAACCTCCTGACCTAGAACGT 125 Query 1588 CGTTAATCTCACCAATTTTGCTGCCTAAGTGCAGTTAATCTGATCAGATTGGAttttttt 1647 | ||| || | ||||||||| || | ||||| |||||||||| | | ||||| | Sbjct 126 CAATAAACT-TCTAATTTTGCTATCTTTG-ATAGTTATTCTGATCAGAATAGTTTTTTGT 183 Query 1648 tGTTT 1652 | ||| Sbjct 184 TTTTT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5352550708356