Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_013110.1 Length=2344 Score E Sequences producing significant alignments: (Bits) Value seq62812 423 3e-115 >seq62812 Length=2273 Score = 423 bits (468), Expect = 3e-115 Identities = 1291/1946 (66%), Gaps = 120/1946 (6%) Strand=Plus/Minus Query 373 TACCATCTCTCCATCGTCTACGGTTATTTCCTTCTCAATGACATGATTACTCGTGCCT-- 430 |||||| | || | ||||| || |||||||| | ||||| | | || |||| Sbjct 1900 TACCATATGTCTACTGTCTATGGCTATTTCCTCTTGAATGATCT--TCACATCCGCCTTG 1843 Query 431 CCGCTTCTGCTCATGCCCGCCCCTGGATTGAAACTTCCTGGAAACGCGAATTCGCCGACT 490 | |||||||||| |||||| ||||| |||| || |||||| || ||||| || | Sbjct 1842 CTCCTTCTGCTCACGCCCGCTCCTGGGCTGAAGTCTCATGGAAAATTGATTTCGCTGAAT 1783 Query 491 TTTTGCTCACACTCCCCGTCCCTGAGTTTCTTACGCCTTTCCTTTCTCAATTCCAACACT 550 | ||||| |||||||| ||||| || ||| || | || || |||| || |||| Sbjct 1782 TCCTGCTCGGTCTCCCCGTTCCTGAATTCCTTGTTCCAATTCTATCCCAATATCAGCACT 1723 Query 551 TTACTACTGATCGTACTAAGAATGTCTTCCTTACACCTTCTGCTGCTGGCTTTGACCATA 610 ||| |||||| | || ||||| || ||||||||||||||||||| ||||||||| Sbjct 1722 TTATCACTGATAGAACCAAGAACGTGCATTTTACACCTTCTGCTGCTGGTTTTGACCATG 1663 Query 611 ATATATTCTTTGGCCGTGTCTTTCCTCTCAACATGTTTTCTGCAATCCATGATTGCACCG 670 | ||||||||| || || |||||| | || |||||| |||| ||||||||||| | Sbjct 1662 ACCAATTCTTTGGACGCGTTTTTCCTTTGAAAATGTTTGCTGCCCTCCATGATTGCGTTG 1603 Query 671 CTACCCTGCCTGGTAATACTCCACGCATCCAAGTTTTACAAGACTTATATAGTCGTGTTC 730 |||| || ||| ||||| || | | ||||||||||| | | |||||||||| || Sbjct 1602 CTACTCTACCTAGTAATGCTACTCTGGCTCAAGTTTTACAGAATGTTTATAGTCGTGATC 1543 Query 731 TGTATACAATTACTGCTCCTGGCTTCACTTGCTTAATCCCTGATTTAATTGGTGTCAC-- 788 | || || ||||||| ||| ||||| | || | || |||||| || | || | || Sbjct 1542 TCTACACGATTACTGAACCTCGCTTCTCGTGTTATATTCCTGATCTATTAGGATTAACCC 1483 Query 789 -AATCGATCAAACCACTCCGACTACTGCAAACTATATGAATTCCAAGCTGTACCAAGTCT 847 | || | | | | || ||| || ||| | || || ||| | || || ||| Sbjct 1482 TGACCGCTGGTGCTAATGTCACCACTTTGAATTATGTCAACTCTAAGATCTATCAGATCT 1423 Query 848 ACACCGCCGTCTTTAATCCTGTCTTATTTCGCGATTTCCAACATCGTTCATCACTTGCTG 907 || | | | || ||||||||| | || |||||| |||||| ||| || |||||||||| Sbjct 1422 ACTCAACAATATTCAATCCTGTCCTGTTCCGCGATCTCCAACGTCGCTCTTCACTTGCTG 1363 Query 908 CTCTTTCATTCCAGTCTCCTGTGT---TTGCTAACAATCACGTCAACGCCTATGATTTAC 964 | || |||||| | || || | || |||| ||||| || |||||||||| Sbjct 1362 CACTCTCATTCAAATCACCCACCTACCCGACTGCCAAT---GTCAATGCTTATGATTTAC 1306 Query 965 TGTTTTCTGCTTCCGCCGCTAATTTACGCGAATTGAAAGTTGTTCTACAAGTTGTC--TC 1022 |||| || || | | || || | || ||| |||||||||| || || ||| || Sbjct 1305 TGTTCTCCGCAACTCCTGCCAACATTCGTGAACTGAAAGTTGTCCTCCA----GTCAATC 1250 Query 1023 TACCGTCC----TTGACGGAAA-AGTTACCACATCCGGTACCCTTGGTGATTTCCTCAC- 1076 ||| ||| |||| ||||| | | | | | | || ||| || | || | || Sbjct 1249 TAC--TCCCAGTTTGATGGAAAGATTCAATGTAAACAG-ACTCTTAGTCAGTTTATTACT 1193 Query 1077 GAAACCTTCTGGTGCCTTAGCTATA---AAACATGGTTATTCAACCTATGCTCTACCAAC 1133 ||||| ||| |||| | ||| || || | || || |||| || || ||||| Sbjct 1192 GAAACTGTCT--CTCCTT--CAATAACCAAGCACTGCTACTCTACCTTCGCGCTCCCAAC 1137 Query 1134 CTG--GTCATAC-AACACTAACGCAACAAAATCT-GCTGTCTATAGTGCTATTACGACTT 1189 || | ||||| | | | || || || || ||| ||| | || | Sbjct 1136 TTGGAGCCATACTGAATCCGATGC----TAAGCTGGCCCGCTACTCTGCGACCACTGCCA 1081 Query 1190 TGACTCTCACTTCCGAACGAGATAGAGCCCAAGACATTTGTTTCCTCCAACGCCCTGCTG 1249 | | || ||||||| ||| ||||| |||||| |||| || |||||||||||||||| Sbjct 1080 TTATTCAAGTTTCCGAAGAAGAAAGAGCTCAAGACTTTTGCTTTCTCCAACGCCCTGCTG 1021 Query 1250 CTGCATTTA----ATGCTACAACTGAAGTTACTGATGTAACTTATGCTGCNNNNNNNACT 1305 || | || |||| ||| |||||||| |||||| | ||||||| | Sbjct 1020 AAGC-TATACCCCATGC--CAA-TGAAGTTAATGATGTTATTTATGCTACTGCCGCCGAA 965 Query 1306 CCAAATCAAGCTGTTCAGTTACCAACTGGTCACCAACTTACAAGGCACTTCCCCTTTTCC 1365 || || |||||| | || || ||| | || | | || |||||| || Sbjct 964 CCCAACACTGCTGTTGCTCTGCCTGCTAATCATGTCATCACTCGCCGTTTTCCCTTTGCC 905 Query 1366 TTGCTCCAAGTTCCAAA----TGGTGCGGAACCTTTTCCGCGCCATGATAATGATGACTT 1421 |||| | ||||| || || | | ||||| | ||||||||| ||||| | Sbjct 904 ---CTCC-GCTGCCAAACCGCTGTTGAGAATGGATTTCCCCACCATGATAACGATGATCT 849 Query 1422 AGTCCAGTTTTCTGACTTTGTGCACACTGCTCCAAGCGTTCTCGTCCTCGATACTGATGG 1481 || || ||| ||| |||||| | ||||| ||||| | |||||||||| ||| Sbjct 848 CGTTCAATTTGAAGACCATGTGCATTCCGCTCCTCGCGTTTTACTCCTCGATACAACTGG 789 Query 1482 TGA----ATTAACCATCTCTGCTCA-CTTGCCACTCCTTGCTGGCAAAATTATTGAATCT 1536 ||| |||| ||| |||| ||| ||||| | |||||||||||| |||||||| Sbjct 788 TGATGGTATTATTAATC----CTCACCTTACCACTGC-TGCTGGCAAAATAATTGAATCC 734 Query 1537 TTCGAAATTGATGGTTCTACCATCGAAATGCCGAATGTTGATAAGTCTCTCGGCCTACAA 1596 |||||| | ||||| || || || |||||||| ||| | ||||| || | ||| | ||| Sbjct 733 TTCGAACTCGATGGATCAACAATTGAAATGCCCAATATCAATAAGCCTTTAGGCATGCAA 674 Query 1597 AACTGTCTGTTTGCTGACTCTGCTGTTAGTTATAGACTA-GTCCGCCCTGGCTCCGCTTT 1655 ||||| ||||||||||||||||| || || | | || ||||| ||||||||| ||| Sbjct 673 AACTGCATGTTTGCTGACTCTGCTATTGCATACA-AGTATGTCCGTCCTGGCTCC-TTTT 616 Query 1656 TCA---CCCGCAACCCGCTGGATCAATAAACCCCCCTCTTAATCGAGTTCGCCCCAACCC 1712 || |||| | ||||| || | || || || |||||||| || | || Sbjct 615 ACAGACCCCGTGA--CGCTGCCTCTGTCCTGCCGCCCCTCAATCGAGTAACTCCTGATCC 558 Query 1713 CCGTCCCCGCTTACCTGCGTCAAGCCTGCTCTATGATCGTACTGAAATCATGCTCCCGAA 1772 | |||||| |||| || || ||||| |||| || || | | || || Sbjct 557 TAGGCCCCGCCTACCCGCCTCCTCTTTGCTCCATGACCGAACAAAGGTATACCTACCTTT 498 Query 1773 CATGAACAATCGTATAGTTGA--AGCTCGTGCCCCTGA-TACCTTACCCGGTATGACT-- 1827 || |||| ||| || ||| ||| | | ||| |||| | || ||||||||| Sbjct 497 GATTAACACTCGGATCAATGAACAGCCC---AACATGACTACCCTTCCTGGTATGACTGT 441 Query 1828 -AGACGTGCTGCCGTAAACTTTTTACGTTATGCGCAATCTTTCTTCGGTTTTCACACCGT 1886 ||| | || ||| | | |||||| | ||||| || | || ||| | || || Sbjct 440 CAGAAACAAT---GTTAACGCTCTGCGTTATACTCAATCCTTTATTGGATTTAAGACTGT 384 Query 1887 AGATTCTAGTTCA---AATGCTCTTTCTCTTGACACCATTCCCGGAATG---ACGAATGG 1940 || || ||| |||||| | ||||||| | | || | |||| |||| Sbjct 383 TGA---CAGCTCATCCAATGCTGCTAATCTTGACGCTGTCCCTGCAATGGAAGAGAATAA 327 Query 1941 TCTGTTACACCTCTGGTCTCCATACTCTTACACTCCGTTTGAGAATGACTACTTTCCAGA 2000 |||| | | ||||| ||||| | |||||||||| ||| | |||| ||| |||| Sbjct 326 TCTGAT---GGTTTGGTCACCATATACATACACTCCGTATGAAGACGACTCCTTCCCAGT 270 Query 2001 CCCAGACCTCGCTGAATCAAGGCACTACTTCTTGTCCAATCTGCGTACCATTTTTGGTAC 2060 | | ||||| | | || || ||||||| || |||| ||||||||||| |||||||| Sbjct 269 CGCTGACCTTTCCAACTCCAGACACTACTATCTGACCAACCTGCGTACCATCTTTGGTAC 210 Query 2061 TGACTACAATCTTGTTCAAGCCAAGCACCCTTATGAAGCTCTCCCTGTTGTTTAGGCTGA 2120 ||| | || || || ||| | ||||| |||||| | ||| || | || || || Sbjct 209 TGATTGTAACCTGATTGAAGTGATCCACCCCTATGAATCCTACCCCGTCGCCTAAGC-GA 151 Query 2121 TTCTCTC-TTTTTCTCGAAATTTTATTTCTAGTTTTGATGTTTATTAGGCTTCCCTT--T 2177 || |||| |||| || ||| ||| |||||| |||||| | || |||| || | Sbjct 150 TT-TCTCAATTTTATC----TTTATTTTAAAGTTTT--TGTTTAATCGGTTTCCTTTTGT 98 Query 2178 CAACAACTACGTGTATGCTACGT-AGTCttttgtttcgattttattt-gtacctgtac-- 2233 |||| ||||||||||||||| | |||||||||||| ||||||| | || | | Sbjct 97 TGACAATCACGTGTATGCTACGTGATTCTTTTGTTTCG--TTTATTTCCGAACTTTCCTG 40 Query 2234 tttcttttt--tcgttattttctgtt 2257 ||| ||||| |||||||||||| || Sbjct 39 TTTGTTTTTTATCGTTATTTTCTTTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7386136282140