Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_021094.1 Length=2435 Score E Sequences producing significant alignments: (Bits) Value seq62892 1609 0.0 >seq62892 Length=2478 Score = 1609 bits (1784), Expect = 0.0 Identities = 1806/2393 (75%), Gaps = 33/2393 (1%) Strand=Plus/Plus Query 15 CGGccccccccGTTCTAATATTTAGAATTCACATTCGTCTATC--CATCCCTTTAAAATA 72 |||||||||| | |||||||||||||||||||||||||| ||| | || ||||| Sbjct 2 CGGCCCCCCC---TTAAATATTTAGAATTCACATTCGTCTATTAACATACTTTGAAAATT 58 Query 73 ACAGCTCACCCTCTTATTTTCTACT--AACGTCCAACCATGCCTCACAACTCCACTCGCA 130 | || | | | ||||||| | |||||| |||||||| |||||| |||| Sbjct 59 AA--CTTAACAATTAGTTTTCTAATTTAACGTCTCACCATGCCGTTCAACTCAGTCCGCA 116 Query 131 ATTATCTTGCGGAACGTATGATTCGTACTAAAAGAGAATTAATGACTTACCAGTCAAAAG 190 |||| ||| ||||| ||| || || | ||||| | |||||||||||| || Sbjct 117 ATTACCTTAGCGAACGCTTGACCCGCCTGAAGATTGAATTTAAGACTTACCAGTCTAACA 176 Query 191 ACCGTGATCCCGATGCAATCCTTGAAGCCTCTCAAGATCAAGACTACCGTCGTCATTATG 250 | | |||||| ||| || ||||| ||||||||| ||||| |||||| | || | Sbjct 177 ATCATGATCCTGATAAGATTCTTGAGCAAACTCAAGATCCCGACTATCGTCGTTACTACG 236 Query 251 ACAACGCCCGCTATGATCCCTCAAATGAGGTGAAATACCGCATCCTTAATAAGGAATACT 310 |||| || || ||| || ||||| |||| ||| || |||||||||||||| | Sbjct 237 ACAATGCTCGTTATAATAATGATAATGAAAAGAAACACCTTATGCTTAATAAGGAATATT 296 Query 311 CAACACTAGTTGAAGCCTATCGTTTAAGAAATGATAGAAAACATCAGCCTTATGAATTAC 370 | || || || ||||| ||||| |||| || | || | |||||| ||| Sbjct 297 CTACTCTTGTCGAAGCTTATCGCACTGACAATGCCTCCAAGCGCCAAACGTATGAACTAC 356 Query 371 ATCAGCCCATCCCTGAAGATGCCGCTCCAATTCCTAAATCTCGTGTTCCTGCTCCTGGTT 430 | ||||| ||||| || || || |||||| | || |||| |||| || ||||| Sbjct 357 ACCAGCCTGTCCCTTCCGACGCTGCCCCAATTGTTCAAAATCGTATTCCCGCACCTGGAA 416 Query 431 TGAAACTTGTTCCTCTCATGTACCATTATGGTCATGTTGTTCACGAGCCTGCTCACTCTG 490 | || || || || |||||||||||||||||||||||| || || || ||| ||| | Sbjct 417 TCAAGCTAGTCCCCCTCATGTACCATTATGGTCATGTTACTCGTGATCCCACTC-CTCAG 475 Query 491 A-TGAATCCGATTCCGATGATAACTCCGATGCTCCGACTAGGCCA----GTTAAAGAGTC 545 |||| ||| || |||| | || | | || ||| | || || | || Sbjct 476 CCTGAACAAGATACCTTTGATGATTCTGCCGTTCT-ACTTGACCCACATGTACCCGTTTC 534 Query 546 AGTCCCTCATTTCGGCTACCCTGTTAGCAAAAAGATTTTTGATCTTAT-TGTTAGAGTTT 604 | | | | ||| | ||| || | | || | | | ||||| |||| || | Sbjct 535 AA---CAAACTACGGATTCCCAATTGATGATCAAATCTATCAACTTATCTGTTTCAGAT- 590 Query 605 ATCCTGAATACATTAAGGTGATTAACACTTACTGTCG-CCCTCTTGGAACTGTTGAAGCT 663 | ||| |||| | || || || ||| | |||||||| |||||| || |||||||| ||| Sbjct 591 ACCCTCAATATCTGAATGTTATAAACTCGTACTGTCGACCCTCT-GGTACTGTTGATGCT 649 Query 664 ACCTTTGCTGATTTTAATAAAGAACAGATTCCTTCTGCTCCTATT-AATTCTA-AGAGAA 721 || ||| |||||||||||||||||||||| || ||||| |||||| | | ||| ||| || Sbjct 650 ACATTTTCTGATTTTAATAAAGAACAGATCCCATCTGCCCCTATTGACTACTACAGAAAA 709 Query 722 GAGAAACTGTGCTCAAGCACATATTCAAATTCCTTGATACTCAGCCTTATCTCCCGCTTC 781 || || || || || ||| |||| ||||||||| | | ||||| || || |||| Sbjct 710 GACCAA--GTCCTTGTCCATATACTCAAGTTCCTTGATGCCAAACCTTACCTACCCCTTC 767 Query 782 ACTTCGTTGATACACAGTATTGCAAAACTCCCCTTGTTACTGGAACTGGTTACCACAATC 841 | ||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| |||| Sbjct 768 ATTTCGTTGATACCCAGTATTGCAAGACTCCTCTTGTAACTGGAACCGGCTACCATAATC 827 Query 842 GCTATTCTTTCAAACAGAAAGCACATGCGAAATATTCTCATCCTGAAGAATATGCAAAGA 901 |||||||||| ||||||||||| ||||| || |||||||| ||| | ||||||| | Sbjct 828 GCTATTCTTTTAAACAGAAAGCGCATGCTAAGTATTCTCACCCTCCCCAGTATGCAACTA 887 Query 902 TGCATACTTCGAAAGGCTATTTTTACAACGCCACTTATGAGAACGCTCGCACTCTAGTCC 961 | || || ||||| |||||||| || || ||||| ||||| || ||||| || | | Sbjct 888 AACCAACCTCCAAAGGTTATTTTTATAATGCTACTTACGAGAATGCCCGCACATTAATTC 947 Query 962 ACTTTATTAAGCAGTTTGGATTACCATTCAATCTGCAATATGCCCCTGAAGACGCTGACC 1021 | || |||||| | ||||||||||| |||| ||| |||||| |||| | Sbjct 948 ATTTGATTAAGAAACACGGATTACCATTTAATCCCGTTGTTGCACCTGAAACTTCTGATC 1007 Query 1022 TCACTGATGATCAGGTTCAATCCTACATTGATGCTGCCAACAACTTCTTCAACGACTATC 1081 ||||||| | | |||| || | |||||| |||| |||| |||||||| || || | Sbjct 1008 TCACTGACTCTGACATTCAGTCTTTCATTGACTCTGCAAACAGTTTCTTCAATGATTACC 1067 Query 1082 CGACGTTATTGTTCACTCGCAACCACATTTCAAAACGAGACGGTACCTTAAAAGTTCGTC 1141 |||||||| |||||||||||||||||||||| ||||| || || | | ||||| || | Sbjct 1068 CGACGTTACTGTTCACTCGCAACCACATTTCGAAACGTGATGGAATTCTTAAAGTCCGCC 1127 Query 1142 CTGTTTATGCTGTAGATGATATTTTTATCATCATCGAACTTATGTTGACATTTCCGTTGA 1201 | ||||| || || ||||| |||||||| ||||||||||| ||| | ||||| || |||| Sbjct 1128 CCGTTTACGCAGTTGATGACATTTTTATAATCATCGAACTCATGCTTACATTCCCTTTGA 1187 Query 1202 CTGTTCAAGCTCGAAAGCAATCGTGTTGCATTATGTATGGTCTCGAAACCATTCGTGGTT 1261 |||||||||||||||| | || |||||||| |||||||| |||||||| ||||| |||| Sbjct 1188 CTGTTCAAGCTCGAAAACCCTCCTGTTGCATAATGTATGGACTCGAAACTATTCGAGGTT 1247 Query 1262 CCAACCATTACATTGAACGCCTAGCTCGCTCGTATTCGACCTTCTTTTCATTAGATTGGT 1321 | || ||||||||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct 1248 CAAATCATTACATTGAACAAATAGCTCGTGACTATTCGACCTTCTTTTCTTTAGATTGGT 1307 Query 1322 CCAGCTATGATCAGCGCTTACCTCGCGTCATAACTGATATTTATTACACTGACTTCCTCC 1381 |||| |||||||| ||| | || |||||||| ||||||||||||||||||||||| |||| Sbjct 1308 CCAGTTATGATCAACGCCTCCCGCGCGTCATCACTGATATTTATTACACTGACTTTCTCC 1367 Query 1382 GAAGCTTAATTGTAATTAACCATGGATACCAACCGACCTATGAATACCCTACTTACCCTG 1441 | || | || || || |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1368 GCAGTCTTATAGTGATAAACCATGGATACCAACCGACCTATGAATACCCCACTTACCCTG 1427 Query 1442 ACCTTGATGAACACAAGATGTACTCTAGAATAGATAATTTATTATACTTTCTTCACACAT 1501 ||||||||||||||||| |||| |||||| |||||| || | || ||||| ||||| | Sbjct 1428 ACCTTGATGAACACAAGTTGTATGATAGAATGGATAATCTACTCTATTTTCTCCACACTT 1487 Query 1502 GGTACAACAATATGACTTTCGTCTTATCCGATGGTTATGCTTACCGCCGAACCCATTGCG 1561 ||||||| || ||||||||| | || | ||||||||||| |||||||||||| ||||| Sbjct 1488 GGTACAATAACATGACTTTCTTACTACCTGATGGTTATGCCTACCGCCGAACCTGTTGCG 1547 Query 1562 GTGTACCCTCTGGCTTGTACAACACACAGTACCTTGATTCTTTTGGTAATCTATTTTTAA 1621 ||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 1548 GTGTACCCTCTGGACTATACAACACACAATACCTTGATTCTTTTGGCAATCTATTCCTAA 1607 Query 1622 TAATTGATGCCATGCTTGAATTTGGTTTCAGCGATGCTGAAATCGACGATTTTATCCTCC 1681 | || || |||||| ||||||| || ||| ||| | |||||||| |||||||||||| Sbjct 1608 TCATAGACGCCATGATTGAATTCGGATTCCTTGATTCCGAAATCGAGAATTTTATCCTCC 1667 Query 1682 TAGTTTTAGGAGATGATAATACAGGTATGACGGTCATTCCCATTGACCGGATTTATGACT 1741 ||||||||||||||||||| || ||||||||| || || || || || | ||| | Sbjct 1668 TAGTTTTAGGAGATGATAACACTGGTATGACGACTATCCCTATATGTCGTATGTTTGATT 1727 Query 1742 TCATCAACTTTCTTGAAAAGTACGCTTTAGTACGATATAATATGGTCCTTTCCCCGACCA 1801 |||||| ||||||||||| || || | ||| ||||| ||||||||||| |||||| Sbjct 1728 TCATCACTTTTCTTGAAAAATATGCCCTTCAACGGTATAACATGGTCCTTTCTGCGACCA 1787 Query 1802 AATCCGTGCTAACTACTTTGCGCTCTAAAATTGAAACCCTTGGCTACGAATGTAACCATG 1861 ||||||| ||||| || || ||||| |||||||| | || || |||| |||||||||| Sbjct 1788 AATCCGTTCTAACGACATTACGCTCAAAAATTGAGTCTCTAGGTTACGCCTGTAACCATG 1847 Query 1862 GATCACCTAAGCGCGATATTTCCAAGCTCATTGCCCAACTCTGCTATCCAGAGAATGGTC 1921 |||| || ||||| ||||| || || ||||||||||||| || ||||||||||| Sbjct 1848 GATCTCCCAAGCGTGATATCGATAAACTTGTTGCCCAACTCTGTTACCCAGAGAATGGCT 1907 Query 1922 TTAAGCCACATACTATGGCTGCCCGAGCAATTGGAATAGCGTATGCCGCTGCTGGCCAAG 1981 | |||||||| || ||||||||| ||||||| || || || |||||| | |||||||||| Sbjct 1908 TAAAGCCACACACCATGGCTGCCAGAGCAATAGGTATTGCATATGCCTCCGCTGGCCAAG 1967 Query 1982 ATTTTATGTTTCACTCATTTTGCCATGATGTGTATAACATATATAGGT-TAGACTACAAA 2040 || || | |||||||| |||||||| ||||| || || |||| ||||| ||| || Sbjct 1968 ATGTTGTATTTCACTCCTTTTGCCAGGATGTATACAATATATTTAGGTCTAG-TTATCGC 2026 Query 2041 CCTGATGCCCGCACTAATCTCAACTTCCAACGCCAGATTTACCATAATCTTGAAGATGGA 2100 ||||| | ||||||||||||| |||||||| ||| | | || || |||||||||||| Sbjct 2027 CCTGACGACCGCACTAATCTCTTTTTCCAACGACAGTTGTTTCACAACCTTGAAGATGGA 2086 Query 2101 ATTCCAGATCTTGCAACATCAGTTGTGCCACCATTCCCATCACTATATGAAGTACGCCAT 2160 || || |||||||| | || ||||||| || || || ||||| |||||| | | | Sbjct 2087 ATCCCCGATCTTGCGCCGCCAATTGTGCCCCCGTTTCCTTCACTCTATGAAATCCAGGAC 2146 Query 2161 ATGTACTCTCAATACCAAGGCCCTTTAACGTATGCTCCAAAATGGAACTACGCTCACTTC 2220 ||||| | |||| ||| ||| | |||||||| ||||||||||| |||| ||| Sbjct 2147 GCCTACTCGTATTACCGAGGTCCTCTGGAATATGCTCCTAAATGGAACTATTCTCATTTC 2206 Query 2221 ATTAATGATCCGGATGATGTACCACCCAATCCCAAAACTATGCGCGAATATGAAATTGAG 2280 ||| ||||||| ||| ||||||| | ||||| |||||| ||| |||||| |||| Sbjct 2207 ATTCATGATCCAGATTCGACACCACCCCACCCCAAGACTATGAGCGCTTATGAAGTTGAA 2266 Query 2281 AATGATCTCATATCTCGTACTGCACCTACTTTTGAAACGGTTGTGCCTGCCACAAGAAAT 2340 || || | | |||| ||| ||||||||||||||||| ||||| ||| |||||| Sbjct 2267 CATAATATGTCAACTCGCGTTGCTCCTACTTTTGAAACGGTCGTGCCCAGCACTAGAAAT 2326 Query 2341 TTCCCGTGATTATTTTGTGC--TTTATAAGCATAGAA--ATTTTTCTCGCTAA 2389 || ||||||||||||||||| |||| |||||| || | ||| || ||||| Sbjct 2327 TTGCCGTGATTATTTTGTGCTTTTTAGAAGCATCTAAGTACTTTACTTGCTAA 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7677105287194