Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_021095.1 Length=2348 Score E Sequences producing significant alignments: (Bits) Value seq62812 293 3e-76 >seq62812 Length=2273 Score = 293 bits (324), Expect = 3e-76 Identities = 923/1414 (65%), Gaps = 41/1414 (3%) Strand=Plus/Minus Query 377 ATGACTATTGTCTATGGATACTTCTTGCTGAATGATATCTACACCCGCCCTGCGCGGTCT 436 ||| ||| ||||||||| || ||| | |||||||| | ||| ||||| ||| | ||| Sbjct 1894 ATGTCTACTGTCTATGGCTATTTCCTCTTGAATGATCTTCACATCCGCCTTGCTCCTTCT 1835 Query 437 GTTCATGCCCGTATTTGGATTGAATCTTCCTGGAGATCTGAATTTGTCAAATTTCTGACG 496 | ||| ||||| ||| |||| || |||| | ||| || | |||| ||| Sbjct 1834 GCTCACGCCCGCTCCTGGGCTGAAGTCTCATGGAAAATTGATTTCGCTGAATTCCTGCTC 1775 Query 497 ACTCTTCCCGTCCCAGATATTCTTAAACCCATTCTGTCTCAGTTCCATCCTTTCACTACT 556 ||| ||||| || || | ||| || ||||| || || | || | || | ||| Sbjct 1774 GGTCTCCCCGTTCCTGAATTCCTTGTTCCAATTCTATCCCAATATCAGCACTTTATCACT 1715 Query 557 GCTAGAACTAAAAATGTGTTCTTTTGCCCCTCTGCTGCTGGATTTGATCATGACCAATTT 616 | |||||| || || ||| ||| || ||||||||||| ||||| ||||||||||| Sbjct 1714 GATAGAACCAAGAACGTGCATTTTACACCTTCTGCTGCTGGTTTTGACCATGACCAATTC 1655 Query 617 TTTGGCCGTACTTATCCTATGAATATGTTCGCTGCTATTCACGACTGCACTGCTACACTT 676 ||||| || || |||| |||| ||||| ||||| | || || ||| |||||| || Sbjct 1654 TTTGGACGCGTTTTTCCTTTGAAAATGTTTGCTGCCCTCCATGATTGCGTTGCTACTCTA 1595 Query 677 CCTGGTAACTCTACCAGAACTGATGTTTTTCGTGAT--TTGTACTCAAGAATTCTGTATT 734 ||| |||| |||| || | ||||| | || || || || || ||| || Sbjct 1594 CCTAGTAATGCTACTCTGGCTCAAGTTTTACAGAATGTTTATAGTCGTGA--TCTCTACA 1537 Query 735 CTATAACTACTCCT-GCTTATACTTGCGTTATTCCTGACTTGATTGGTGCTACCC---CC 790 | || ||| ||| |||| | | || ||||||||| | | || |||| || Sbjct 1536 CGATTACTGAACCTCGCTTCT-CGTGTTATATTCCTGATCTATTAGGATTAACCCTGACC 1478 Query 791 GATCAAACAACCCGAACAACGATAAACTTTATGAACTCAAGGCTCTACCAAACCT--TTA 848 | | | | || || | || | | | ||||| | | |||| || | || | | Sbjct 1477 GCTGGTGCTAATGTCACCACTTTGAATTATGTCAACTCTAAGATCTATCAGATCTACTCA 1418 Query 849 ACTCTCTGTTTAATCCTGTTCTTTTCCGCGACTCCCAGCGCCGTGCTGCTCTTGCTGCCC 908 || | | | |||||||| || |||||||| ||| || || || | |||||||| | Sbjct 1417 ACAATAT--TCAATCCTGTCCTGTTCCGCGATCTCCAACGTCGCTCTTCACTTGCTGCAC 1360 Query 909 TCTCATTTACTGCTCCTACTTACCCGACTAACCATATCAATGCATATGATTACCTGTTCT 968 ||||||| | | || || ||||||||| | || ||||||| ||||||| ||||||| Sbjct 1359 TCTCATTCAAATCACCCACCTACCCGACTGCCAATGTCAATGCTTATGATTTACTGTTCT 1300 Query 969 CTGCAACCGCCCCAAATCTTAGAGAACTAAAGATTGTTATACAATC--TGTGATTGCA-- 1024 | ||||| | | || || | ||||| || |||| | || || | | | || Sbjct 1299 CCGCAACTCCTGCCAACATTCGTGAACTGAAAGTTGTCCTCCAGTCAATCTACTCCCAGT 1240 Query 1025 -TGCTCCAAAGGTGTTTTTGATGTTTCCGGAACACTCGGATCTTATGTTTCTGATTATTC 1083 || | |||| | | |||| | || | || | | | || |||| | Sbjct 1239 TTGATGGAAAGAT----TCAATGTAAACAGA-CTCTTAGTCAGTTTATTACTGAAACTGT 1185 Query 1084 CTCTTCCTCAATTGTCCATCATGGTTACTCTACGTATCCACTCCCTGTCTGGTCTCATAC 1143 |||| | ||||| | | || | |||||||| | | ||||| ||| ||||| Sbjct 1184 CTCTCCTTCAATAACCAAGCACTGCTACTCTACCTTCGCGCTCCCAACTTGGAGCCATAC 1125 Query 1144 CGAT---GATGCCA--CCAAACCGCAAACCTTC-ACTGCTGCCACAATTTTCCAACTGGT 1197 || ||||| | | |||| | || | || |||||| ||| ||| || Sbjct 1124 TGAATCCGATGCTAAGCTGGCCCGCTACTCTGCGACCACTGCCATTATT---CAA---GT 1071 Query 1198 CACTGAAGATGCCAGAGCTCAAGATATCTGCTTCCTCCAACGCCCTGCTGCTGAGATTGC 1257 | ||||| | ||||||||||| | ||||| |||||||||||||||| | || | Sbjct 1070 TTCCGAAGAAGAAAGAGCTCAAGACTTTTGCTTTCTCCAACGCCCTGCTGAAGCTATACC 1011 Query 1258 CCACACTCGTCGTATCACTGATTTGACTTATGCTTCAACTGCTACTCCCACTGTTCCAGC 1317 ||| | | | | |||| | | ||||||| | | || |||| | | | Sbjct 1010 CCATGCCAATGAAGTTAATGATGTTATTTATGCTACTGCCGCCGAACCCAACACTGCTGT 951 Query 1318 TACAATGCCTGCAAATCATGGTATATTTCGAATTTGGCCCTACTGTCTCCGCTGTGACAA 1377 | | ||||||| ||||||| || ||| || |||| |||||||| | | Sbjct 950 TGCTCTGCCTGCTAATCATGTCATCACTCGCCGTTTTCCCTTTGCCCTCCGCTGCCAAAC 891 Query 1378 TGATGCCGAAAATGGCTTCCCTCGTCACGACAATGAAGATCTCGTCGCTTACTCTGATGA 1437 | || || ||||| || || | || || || || |||||||| | | | ||| || Sbjct 890 CGCTGTTGAGAATGGATTTCCCCACCATGATAACGATGATCTCGT---TCAATTTGAAGA 834 Query 1438 GATT---CACACTGCTCCAAGCGTTCTTGTCCTCGATACCCCTGGTGATACTGTTATTAG 1494 | || | ||||| ||||| | |||||||||| |||||||| | |||||| Sbjct 833 CCATGTGCATTCCGCTCCTCGCGTTTTACTCCTCGATACAACTGGTGATGGTATTATTAA 774 Query 1495 TGCCCATATGCCTACCGTTGTCGGTAAGGTAATTGAGTCTTTTGAACTCGATGGCTCTAC 1554 | | || | | || | || || || ||||||| || || ||||||||||| || || Sbjct 773 TCCTCACCTTACCACTGCTGCTGGCAAAATAATTGAATCCTTCGAACTCGATGGATCAAC 714 Query 1555 AATCGCAATGCCTGATGCTAGAAAATCACTTGCCATGCAAAACTGCATGTTTGCTGACTC 1614 ||| | |||||| || | || | | | ||||||||||||||||||||||||||| Sbjct 713 AATTGAAATGCCCAATATCAATAAGCCTTTAGGCATGCAAAACTGCATGTTTGCTGACTC 654 Query 1615 TGCCATTGCTTACAAGTATGTTCGTCCTGGATCCTACTGGCGCCCTCGTGCTGCTGGTTC 1674 ||| ||||| ||||||||||| |||||||| |||| | | || |||| |||| || Sbjct 653 TGCTATTGCATACAAGTATGTCCGTCCTGGCTCCTTTTACAGACCCCGTGACGCTGCCTC 594 Query 1675 CATCCTGCCACCTCTTAATCGAGCCCTCCCTACTGCTCGCCCCCGTTTACCAGCTTCCTC 1734 ||||||| || || ||||||| ||| | || | ||||| |||| || ||||| Sbjct 593 TGTCCTGCCGCCCCTCAATCGAGTAACTCCTGATCCTAGGCCCCGCCTACCCGCCTCCTC 534 Query 1735 CTTGCTTCATGACAGAACTAAGGTTTTCCTACCT 1768 ||||| |||||| |||| ||||| | ||||||| Sbjct 533 TTTGCTCCATGACCGAACAAAGGTATACCTACCT 500 Score = 140 bits (154), Expect = 5e-30 Identities = 233/329 (71%), Gaps = 26/329 (8%) Strand=Plus/Minus Query 1941 ATTTGATGATCTGGTCCCCATACACTTACAATCCGTATGAGTCTGATGATTATCCTCCC- 1999 || ||||| | ||||| ||||| || |||| ||||||||| || || | | |||| Sbjct 327 ATCTGATGGTTTGGTCACCATATACATACACTCCGTATGAA---GACGACTC-CTTCCCA 272 Query 2000 GTCGC---CCTTGATGCGTCTAGACACTACTACCTGACTAATCTGCGTACCATTTTTGGT 2056 ||||| |||| || ||||||||||| ||||| || ||||||||||| |||||| Sbjct 271 GTCGCTGACCTTTCCAACTCCAGACACTACTATCTGACCAACCTGCGTACCATCTTTGGT 212 Query 2057 ACTGACTACAATCTTGTTAGTGTCAAACACATCTATGAATCCTACCCCGCTGTCTAAGTG 2116 ||||| | || || || || | ||| ||||||||||||||||| | ||||| | Sbjct 211 ACTGATTGTAACCTGATTGAAGTGATCCACCCCTATGAATCCTACCCCGTCGCCTAAGCG 152 Query 2117 ATTACTCTCCTTTTCTTTTAATTAAAGTTTAAAAGTTTTTGATGTTTAATCGTTTTC--T 2174 ||| ||| ||| |||| ||| |||||||| |||||||||| |||| | Sbjct 151 ATTTCTCAATTTTATCTTTA-------TTTTAAAGTTTT---TGTTTAATCGGTTTCCTT 102 Query 2175 TTCCAG-CGAACACGCCTACACTGCGTGGTTCttttgtttcgttttaattttatgaactt 2233 || | | | |||| || || |||| |||||||||||||||| ||| |||||| Sbjct 101 TTGTTGACAATCACGTGTATGCTACGTGATTCTTTTGTTTCGTTT---ATTTCCGAACTT 45 Query 2234 ttgtttatgtttttttcaacgttgttttC 2262 | | | |||||||| | |||| ||||| Sbjct 44 TCCTGTTTGTTTTTT--ATCGTTATTTTC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7398926128516