Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_021147.1 Length=2430 Score E Sequences producing significant alignments: (Bits) Value seq62892 1438 0.0 >seq62892 Length=2478 Score = 1438 bits (1594), Expect = 0.0 Identities = 1746/2363 (74%), Gaps = 44/2363 (2%) Strand=Plus/Plus Query 17 CCCACCTTTAATATTTGAGAATTCACATTCGTCTAAATTAACAAGCTCTCACAAAGCCTC 76 ||| |||| ||||||| |||||||||||||||||| |||||| || | | ||| | Sbjct 6 CCCCCCTTAAATATTT-AGAATTCACATTCGTCTA--TTAACATACTTTGA-AAATTAAC 61 Query 77 TGCTCTAATTA--TTAC------AACGTCTCACAATGCCTTTCAACTCTGTTCGCAACTA 128 | | ||||| || | |||||||||| ||||| |||||||| || ||||| || Sbjct 62 TTAAC-AATTAGTTTTCTAATTTAACGTCTCACCATGCCGTTCAACTCAGTCCGCAATTA 120 Query 129 CCTTGCTGAACGCCTCATTCGCCTGAAAAGAGAATGGATGACCTTCCAATCATCCGACCG 188 |||| |||||| | | |||||||| | |||| | ||| | ||| || | | | Sbjct 121 CCTTAGCGAACGCTTGACCCGCCTGAAGATTGAATTTAAGACTTACCAGTCTAACAATCA 180 Query 189 TGATCCTGAACTTACTCTTGAAATTTCTCAAGACCCCGACTTTCGCCGCTATTATGCAAA 248 ||||||||| | |||||| ||||||| ||||||| ||| || || || | || Sbjct 181 TGATCCTGATAAGATTCTTGAGCAAACTCAAGATCCCGACTATCGTCGTTACTACGACAA 240 Query 249 CGCTCGTTTTAACCTTAATAATGAAGCTAAACAATTAGCACTGAATAAAGAGTACTCTAC 308 ||||||| ||| | |||||||| ||||| | || ||||| || || ||||| Sbjct 241 TGCTCGTTATAATAATGATAATGAAAAGAAACACCTTATGCTTAATAAGGAATATTCTAC 300 Query 309 TCTAGTCGAAGCTTATAGAACTGATAATGATCAGAAGCACCAACCATATGAACTCCATCA 368 ||| |||||||||||| | ||||| |||| |||| |||| | |||||||| || || Sbjct 301 TCTTGTCGAAGCTTATCGCACTGACAATGCCTCCAAGCGCCAAACGTATGAACTACACCA 360 Query 369 ACCTGTTCCACTAGATGCAGCTCCTGTCCCTGACAATCGTCAACCCGCTCCTGGCATTAA 428 ||||| || || || || || | | | |||||| ||||| ||||| || || Sbjct 361 GCCTGTCCCTTCCGACGCTGCCCCAATTGTTCAAAATCGTATTCCCGCACCTGGAATCAA 420 Query 429 ATTTGTTCCCCTAATGTATCACTATGGCCACGTTATCCGTGACCCTTCTGCTCTCGATGA 488 | || ||||| ||||| || ||||| || |||| ||||| || || ||| ||| Sbjct 421 GCTAGTCCCCCTCATGTACCATTATGGTCATGTTACTCGTGATCCCACTCCTCAGCCTGA 480 Query 489 TAGTTCACAACTATCGAACGATGAAACG--CTATCAA--TGAC-----TGAACCCTCTGC 539 |||| | ||||| | | || | |||| || |||| | | Sbjct 481 ------ACAAGATACCTTTGATGATTCTGCCGTTCTACTTGACCCACATGTACCCGTTTC 534 Query 540 TACTGAATATGGCTACCCTATTGATATCCGCATCTATCAGATTATC-GTCCAACGATACC 598 || | || || | ||| |||||| | |||||||| ||||| || | |||||| Sbjct 535 AACAAACTACGGATTCCCAATTGATGATCAAATCTATCAACTTATCTGTTTCA-GATACC 593 Query 599 CTGAATATCTTGCTGTTATTCATGAGTACTGCCGACCAATTGGTACTGTTAATGCTACAT 658 || ||||||| |||||| | |||||| ||||| |||||||||| ||||||||| Sbjct 594 CTCAATATCTGAATGTTATAAACTCGTACTGTCGACCCTCTGGTACTGTTGATGCTACAT 653 Query 659 TCCAAGATTTCAATAAAGAACAGACTCCATCTGCTCCTATTGACTTAACCCGAAAAGAAG 718 | ||||| ||||||||||||| |||||||| |||||||||| | ||||||| Sbjct 654 TTTCTGATTTTAATAAAGAACAGATCCCATCTGCCCCTATTGACTACTACAGAAAAGACC 713 Query 719 CTGTTCTCGAACATATCTTTCGATTTCTTGATGTCAAACCCTACCTACCTGTCCACTTTG 778 || || | ||||| | || ||||||| |||||| |||||||| | || || | Sbjct 714 AAGTCCTTGTCCATATACTCAAGTTCCTTGATGCCAAACCTTACCTACCCCTTCATTTCG 773 Query 779 TTGACACTCAGTTTTGCAAGACTCCTCTCGTCACTGGTACTGGTTACCATAATCGCTATT 838 |||| || |||| ||||||||||||||| || ||||| || || |||||||||||||||| Sbjct 774 TTGATACCCAGTATTGCAAGACTCCTCTTGTAACTGGAACCGGCTACCATAATCGCTATT 833 Query 839 CTTTTAAACAGAAAGCGCATGCGAAATACTCACACCCTGATGAGTATGCTCTCAATCCCA 898 |||||||||||||||||||||| || || || |||||| ||||||| || || | Sbjct 834 CTTTTAAACAGAAAGCGCATGCTAAGTATTCTCACCCTCCCCAGTATGCAACTAAACCAA 893 Query 899 CTTCAAAAGGTTACTTTTACAATGCAACCTATGAGAATGCTCGCACCCTGGTACACTATA 958 | || |||||||| ||||| ||||| || || |||||||| ||||| | | || | | Sbjct 894 CCTCCAAAGGTTATTTTTATAATGCTACTTACGAGAATGCCCGCACATTAATTCATTTGA 953 Query 959 TCAAGCAATATGGTCTCCCATTTAAGCTTGAATTCGATCATTCTGA---TTCTGACCTTA 1015 | ||| || | || | |||||||| | | | | | |||| |||||| || | Sbjct 954 TTAAGAAACACGGATTACCATTTAATCCCGTTGTTGCAC---CTGAAACTTCTGATCTCA 1010 Query 1016 CCGATGAACAGATCCAATTCTACATCGACAAAGCCAACGATTTCTTTAATGATTACCCGA 1075 | || | || || | | ||| ||| || ||| |||||| ||||||||||||| Sbjct 1011 CTGACTCTGACATTCAGTCTTTCATTGACTCTGCAAACAGTTTCTTCAATGATTACCCGA 1070 Query 1076 CGTTACTATTCACTCGCAACCACATTTCGAAGCGTGATGGTACTTTAAAAGTACGACCCG 1135 ||||||| ||||||||||||||||||||||| |||||||| | | | ||||| || |||| Sbjct 1071 CGTTACTGTTCACTCGCAACCACATTTCGAAACGTGATGGAATTCTTAAAGTCCGCCCCG 1130 Query 1136 TCTACGCTGTTGATGATTTATTTATCATCATTGAACTTATGCTGACCTTTCCGCTTACTG 1195 | ||||| |||||||| | ||||| ||||| ||||| ||||| || || || | |||| Sbjct 1131 TTTACGCAGTTGATGACATTTTTATAATCATCGAACTCATGCTTACATTCCCTTTGACTG 1190 Query 1196 TTCAAGCTCGAAAAGCCTCCTGTTGCATAATGTACGGTTTAGAAACCATTCGTGGTTCTA 1255 |||||||||||||| ||||||||||||||||||| || | ||||| ||||| ||||| | Sbjct 1191 TTCAAGCTCGAAAACCCTCCTGTTGCATAATGTATGGACTCGAAACTATTCGAGGTTCAA 1250 Query 1256 ACCATTACATTGATCGCTTAGCGCGCTCGTATTCGACCTTCTTCTCATTAGATTGGTCCA 1315 | ||||||||||| | |||| || |||||||||||||| || ||||||||||||| Sbjct 1251 ATCATTACATTGAACAAATAGCTCGTGACTATTCGACCTTCTTTTCTTTAGATTGGTCCA 1310 Query 1316 GTTATGACCAACGACTTCCTCGAGTCATTACTGACATTTACTACACTGACTTCCTCCGAA 1375 ||||||| ||||| || || || ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 1311 GTTATGATCAACGCCTCCCGCGCGTCATCACTGATATTTATTACACTGACTTTCTCCGCA 1370 Query 1376 GATTAATTGTTATTAATAATGGATACCAGCCTACTTACGAATACCCTGTCTACCCTGACC 1435 | | || || || || |||||||||| || || || |||||||| |||||||||| Sbjct 1371 GTCTTATAGTGATAAACCATGGATACCAACCGACCTATGAATACCCCACTTACCCTGACC 1430 Query 1436 TTGATGACCACAAAATGTATGATAGGATGAACAATCTTTTGTACTTCCTACACACTTGGT 1495 ||||||| ||||| |||||||||| ||| | ||||| | || || || |||||||||| Sbjct 1431 TTGATGAACACAAGTTGTATGATAGAATGGATAATCTACTCTATTTTCTCCACACTTGGT 1490 Query 1496 ATAATAATATGACATTTCTGTTACCTGACGGATATGCATACCGCCGAACCCACTGCGGTG 1555 | ||||| ||||| || | ||||||| || ||||| |||||||||||| ||||||| Sbjct 1491 ACAATAACATGACTTTCTTACTACCTGATGGTTATGCCTACCGCCGAACCTGTTGCGGTG 1550 Query 1556 TACCATCTGGCCTATACAATACTCAGTATTTAGATTCATTTGGCAATCTCTTTTTAATAA 1615 |||| ||||| |||||||| || || || | ||||| ||||||||||| || |||| | Sbjct 1551 TACCCTCTGGACTATACAACACACAATACCTTGATTCTTTTGGCAATCTATTCCTAATCA 1610 Query 1616 TTGACGCCATGATGGAATTTGGTTTCTTTGATTCAGAAATCGAATCTTTCATCCTCCTAA 1675 | ||||||||||| ||||| || ||| ||||||| |||||||| ||| ||||||||| Sbjct 1611 TAGACGCCATGATTGAATTCGGATTCCTTGATTCCGAAATCGAGAATTTTATCCTCCTAG 1670 Query 1676 TTTTAGGTGATGATAATACTGGAATGACTACGATCTCCATTGATCGGATATCATTATTCA 1735 ||||||| |||||||| ||||| ||||| || ||| | || ||| || | |||| Sbjct 1671 TTTTAGGAGATGATAACACTGGTATGACGACTATCCCTATATGTCGTATGTTTGATTTCA 1730 Query 1736 TCAATTTTCTTGAAATATATGCAAAAGAACGTTATAACATGGTCCTCTCTTCGACCAAGT 1795 ||| ||||||||||| |||||| |||| |||||||||||||| ||| ||||||| | Sbjct 1731 TCACTTTTCTTGAAAAATATGCCCTTCAACGGTATAACATGGTCCTTTCTGCGACCAAAT 1790 Query 1796 CCGTTCTGACTGCCCTTCGCTCAAAGATTGAAACCTTAGGTTACCAATGTAACTATGGTT 1855 ||||||| || | | |||||||| ||||| | |||||||| |||||| |||| | Sbjct 1791 CCGTTCTAACGACATTACGCTCAAAAATTGAGTCTCTAGGTTACGCCTGTAACCATGGAT 1850 Query 1856 CACCCAAGCGTGACATAAAGAAACTTGTCGCCCAACTCTGTTATCCAGAAAATGGACTCA 1915 | ||||||||||| || | |||||||| |||||||||||||| ||||| ||||| | | Sbjct 1851 CTCCCAAGCGTGATATCGATAAACTTGTTGCCCAACTCTGTTACCCAGAGAATGGCTTAA 1910 Query 1916 AGCCACATACCATGTCTGCCCGAGCAATTGGCATAGCATATGCCGCTGCTGGCCAAGATT 1975 ||||||| |||||| ||||| ||||||| || || ||||||||| | |||||||||||| Sbjct 1911 AGCCACACACCATGGCTGCCAGAGCAATAGGTATTGCATATGCCTCCGCTGGCCAAGATG 1970 Query 1976 TCATGTTTCACTCCTTTTGTCAGGACGTGTATAACATGTTTATTTCAGATTATAGACCTG 2035 | | |||||||||||||| ||||| || || || || |||| || |||| | |||| Sbjct 1971 TTGTATTTCACTCCTTTTGCCAGGATGTATACAATATATTTAGGTCTAGTTATCGCCCTG 2030 Query 2036 ATGCTCGCATGAATCTCTATTTCCAACGTCAGATTTTCCACAATCTCGAAGATGGATTAC 2095 | | |||| ||||||| ||||||||| ||| | || ||||| || ||||||||| | | Sbjct 2031 ACGACCGCACTAATCTCTTTTTCCAACGACAGTTGTTTCACAACCTTGAAGATGGAATCC 2090 Query 2096 CTGATTTATCGACATCTACTGTGCCCCGTTTTCCCTCATTGTTTGAAATCCGTGAAGCTT 2155 | ||| | || | | | |||||||| ||||| ||| | | |||||||| || || | Sbjct 2091 CCGATCTTGCGCCGCCAATTGTGCCCCCGTTTCCTTCACTCTATGAAATCCAGGACGCCT 2150 Query 2156 ACTCCCGTTACCAAGGACCGCTCACCTTTACTCCAAAATGGAA-TATTGCTCATTTCATC 2214 |||| ||||| ||| || || | | |||| |||||||| |||| |||||||||| Sbjct 2151 ACTCGTATTACCGAGGTCCTCTGGAATATGCTCCTAAATGGAACTATT-CTCATTTCATT 2209 Query 2215 AACGACCCGGATTATACACCCCCCAACTCCAAAACTATGGCTGACTATGAATATGATAAT 2274 | || || |||| ||||| ||| || |||| |||||| | |||||| ||| || Sbjct 2210 CATGATCCAGATTCGACACCACCCCACCCCAAGACTATGAGCGCTTATGAAGTTGAACAT 2269 Query 2275 CGTAT---CACTTTCAAAGTTGCCCCTACTTTTGAAACGGTAGTGCCTAGCACAAAAAGT 2331 ||| ||| | ||||| ||||||||||||||||| ||||| ||||| | || | Sbjct 2270 AATATGTCAACTCGC---GTTGCTCCTACTTTTGAAACGGTCGTGCCCAGCACTAGAAAT 2326 Query 2332 TTTCCGTGATTTCCTTGTGCGTT 2354 || |||||||| |||||| || Sbjct 2327 TTGCCGTGATTATTTTGTGCTTT 2349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7661117979224