Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_031130.1 Length=2266 Score E Sequences producing significant alignments: (Bits) Value seq62812 383 2e-103 >seq62812 Length=2273 Score = 383 bits (424), Expect = 2e-103 Identities = 1288/1968 (65%), Gaps = 73/1968 (4%) Strand=Plus/Minus Query 333 CGTGAACATTCCAAGTCATCTGTTGCCACCATTTGCATGTATCATCTGTCCATTGTCTAT 392 |||||||| || || |||| ||| || || | || ||| |||| | ||||||| Sbjct 1939 CGTGAACACTCGAAAATCTCTGCTGCGACAATGATTTTATACCATATGTCTACTGTCTAT 1880 Query 393 GGATTTTTCCTCATCAATGACCTCAATGTCCGTCCTGCTCCGTCTGCTCATGCCCGTATC 452 || | ||||||| | ||||| || | |||| | |||||| |||||||| ||||| | Sbjct 1879 GGCTATTTCCTCTTGAATGATCTTCACATCCGCCTTGCTCCTTCTGCTCACGCCCGCTCC 1820 Query 453 TGGGCCGAATCCAACTGGAGATCTGAATTTGTGAAATTTCTGTCCACCCTGCCTGTACCT 512 ||||| ||| | |||| | ||| || | |||| ||| | || || || ||| Sbjct 1819 TGGGCTGAAGTCTCATGGAAAATTGATTTCGCTGAATTCCTGCTCGGTCTCCCCGTTCCT 1760 Query 513 GAGTTCCTTATTCCCATCCTATCCCAGTTTCACGCCTTTGAAACCGCAAGAACAAAGAAT 572 || |||||| |||| || |||||||| | ||| |||| || | ||||| ||||| Sbjct 1759 GAATTCCTTGTTCCAATTCTATCCCAATATCAGCACTTTATCACTGATAGAACCAAGAAC 1700 Query 573 GTTTTCTTTATTCCCTCTGCCGCCGGCTATGACCACGACCAATTCTTCGGACGTGTTTAT 632 || |||| || ||||| || || | |||||| ||||||||||| ||||| |||| | Sbjct 1699 GTGCATTTTACACCTTCTGCTGCTGGTTTTGACCATGACCAATTCTTTGGACGCGTTTTT 1640 Query 633 CCTTTGAATATGTTCGCCGCAATTCATGACTGTACTGCCACACTGCCCGGAAA--CTCCT 690 |||||||| ||||| || || | ||||| || ||| || || || | || || || Sbjct 1639 CCTTTGAAAATGTTTGCTGCCCTCCATGATTGCGTTGCTACTCTACCTAGTAATGCTACT 1580 Query 691 CCAAAATCGATGTCCTTAGAGACC---TCTACTCCAGAGTACTCTACTCAATTACTGACC 747 | || | | ||| ||| | || || || |||||| | |||||||| | Sbjct 1579 CTGGC-TCAAGTT--TTACAGAATGTTTATAGTCGTGAT--CTCTACACGATTACTGAAC 1525 Query 748 CAGCCTACACCTGCGTCATTCCCGATCTTATTGGAATCACCCTTAGCGCTGCTGACATTA 807 | || | | || ||||| ||||| | ||| | ||||| | ||||| || | | Sbjct 1524 CTCGCTTCTCGTGTTATATTCCTGATCTATTAGGATTAACCCTGACCGCTGGTGCTAATG 1465 Query 808 CC--CAAGCTCAAT-ACATGAATTCAAAACTTTACCAAGTTTTCTCTTCTGTTATTAATC 864 | || | ||| | | || || || | || || | | ||| | | | |||| Sbjct 1464 TCACCACTTTGAATTATGTCAACTCTAAGATCTATCAGATCTACTCAACAATATTCAATC 1405 Query 865 CTGTCCTGTTCCGCGACTTTCAGCGCCGATCCTCCCTCGCCGCTCTATCATTCAAAGCTC 924 |||||||||||||||| | || || || || || || || || || ||||||||| | | Sbjct 1404 CTGTCCTGTTCCGCGATCTCCAACGTCGCTCTTCACTTGCTGCACTCTCATTCAAATCAC 1345 Query 925 CAACGTTTGCCTCTGCTAACGTTAACGCTTATGATCTGATGTTTTCAGCCACTTCCGCTA 984 | || | | |||| || || || ||||||||| | |||| || || ||| | || | Sbjct 1344 CCACCTACCCGACTGCCAATGTCAATGCTTATGATTTACTGTTCTCCGCAACTCCTGCCA 1285 Query 985 ATCTGCGTGAATTAAAGGTTGTCCTACAATCAGTCCATGCC--GTTATCTCTGATG--AT 1040 | | |||||| | || |||||||| || ||| || | || ||| ||||| | Sbjct 1284 ACATTCGTGAACTGAAAGTTGTCCTCCAGTCAATCTACTCCCAGTT-----TGATGGAAA 1230 Query 1041 GTATCA-TGTAAGACCAGCCTTGGTCAATTTATTGCTGATGCTACCACCTCAACAATCAT 1099 | ||| ||||| | ||| |||| |||||| |||| || | | | |||| | Sbjct 1229 GATTCAATGTAAACAGACTCTTAGTCAGTTTATTACTGAAACTGTCTCTCCTTCAATAAC 1170 Query 1100 TAAACATGGATACTCCACATACGCTCTTCCCACCTGGTCCCACAGTGAAGTCACCAACAA 1159 || || | ||||| || | ||| || || || ||| ||| | |||| || | | Sbjct 1169 CAAGCACTGCTACTCTACCTTCGCGCTCCCAACTTGGAGCCATACTGAA-TCCGATGCTA 1111 Query 1160 AGCTCAAACCTTTCG-TGCCATTACTGCCCAACAACTAATCTCTGAAGATGCCCGTGCCC 1218 |||| | | | ||| | |||||| | | | || ||||| | | || | Sbjct 1110 AGCTGGCCCGCTACTCTGCGACCACTGCCATTATTCAAGTTTCCGAAGAAGAAAGAGCTC 1051 Query 1219 AAGACTTCTGTTTCCTTCAACGCCCTGCAGCTGAAATTCCTCACACCCACAACCTCGAAG 1278 ||||||| || || || ||||||||||| | | || || || || | | | | | Sbjct 1050 AAGACTTTTGCTTTCTCCAACGCCCTGCTGAAGCTATACCCCATGCCAATGAAGTTAATG 991 Query 1279 ACGTACGTTACG-TACG--CACCGATGCCCCCACTGAACCAGTCGCTCTGCCCCAGAATC 1335 | || ||| | ||| | |||| || ||||| | || |||||||| |||| Sbjct 990 ATGTTATTTATGCTACTGCCGCCGAACCCAACACTG---CTGTTGCTCTGCCTGCTAATC 934 Query 1336 ACAGTATCATCCGTAACTTCCCTCTCTGCC-TCAGAAACAATGCGAATGCCGCCGTC--- 1391 | |||| || || || || |||| || | ||| || |||| || Sbjct 933 ATGTCATCACTCGCCGTTTTCC-CTTTGCCCTCCGC-----TGCCAAA-CCGCTGTTGAG 881 Query 1392 ------TTTCCCCGCGTAGACAACAACACACT-GATCAATTTTAGTGAAGAAATCCACAC 1444 ||||||| | || ||| | || | ||||||| | || | | || | Sbjct 880 AATGGATTTCCCCACCATGATAACGATGATCTCGTTCAATTTGAA-GACCATGTGCATTC 822 Query 1445 TGTTCCAAGCGTCTTAGTGCTCGACACCGATGGTGATCAAACCATCACTGCCCACCTG-C 1503 | ||| |||| ||| | ||||| || ||||||| | || | | | ||||| | Sbjct 821 CGCTCCTCGCGTTTTACTCCTCGATACAACTGGTGATGGTATTATTAATCCTCACCTTAC 762 Query 1504 CACTACTTGCCGGAAAGATCATTGAATCTTTTGAACTCGATGGAACCACTATCGAAATGC 1563 |||| || || || || || |||||||| || |||||||||||| | || || ||||||| Sbjct 761 CACTGCT-GCTGGCAAAATAATTGAATCCTTCGAACTCGATGGATCAACAATTGAAATGC 703 Query 1564 CCAATGCCATGAAATCACTCGGCATGCAAAACTGCATGTTCGCTGACTCTGCCATTCCGT 1623 ||||| || || | | |||||||||||||||||||| ||||||||||| ||| | | Sbjct 702 CCAATATCAATAAGCCTTTAGGCATGCAAAACTGCATGTTTGCTGACTCTGCTATTGCAT 643 Query 1624 ACAAGTATGTTCGCCCTGGCTCCGCTTACCATCCCGTTAATGCTGGAACCATACTGCCGC 1683 |||||||||| || ||||||||| |||| ||| | | |||| | | ||||||| Sbjct 642 ACAAGTATGTCCGTCCTGGCTCCTTTTACAGACCCCGTGACGCTGCCTCTGTCCTGCCGC 583 Query 1684 CCCGTTCTCGAGCTACTCCCAATTCCACTCCTCGCCTGCCTGCCTCGTCGTTCCTATACA 1743 ||| ||||| ||||| || | | || ||||| || ||||| || || || | Sbjct 582 CCCTCAATCGAGTAACTCCTGATCCTAGGCCCCGCCTACCCGCCTCCTCTTTGCTCCATG 523 Query 1744 ATCGACTGCGTGTTAATCTCCCCC-GATTCAACCTCGCTATCAATGAAGAACGCAT--TG 1800 | ||| || | || || |||| | |||| ||||||||| | | || || Sbjct 522 ACCGAACAAAGGTATACCTACCTTTGATTAACACTCGG-ATCAATGAACAGCCCAACATG 464 Query 1801 GCAACATTCTCCCAGGAATGACTCTACTTGATGGAGTCACTGTCCTCCGGTATGTTCAGT 1860 | || || || || |||||| | | || | | || || ||| ||| | Sbjct 463 ACTACC--CTTCCTGGTATGACTGTCAGAAACAATGTTAACGCTCTGCGTTATACTCAAT 406 Query 1861 CCTTTCTAGGATTCAACACCGTCAGCCGTGCTGACAATGCCGATAATGGAGACAATGTCC 1920 ||||| | ||||| || || || | | | |||||| | |||| ||| ||||| Sbjct 405 CCTTTATTGGATTTAAGACTGTTGACAGCTCATCCAATGCTGCTAATCTTGACGCTGTCC 346 Query 1921 CGGCGATGCCCCGGAACCTGCTTCTGGTCTGGTCCCCGTACACGTACACTCCGTATGAAT 1980 | || ||| ||| || |||| ||||| || || || ||||||||||||||| Sbjct 345 CTGCAATGGAAGAGAATAATCTGATGGTTTGGTCACCATATACATACACTCCGTATGAAG 286 Query 1981 CTGATGACCTGCCTGAACCAGCACTTGGCGAATCAAGGCACTACTACTTGACAAACCTCC 2040 || | | || | | | ||| | | || || |||||||| |||| ||||| | Sbjct 285 ACGACTCCTTCCCAGTCGCTGACCTTTCCAACTCCAGACACTACTATCTGACCAACCTGC 226 Query 2041 GTACCATCTTCGGAACGGACTACAACCTTGTTCAAGCCAAGCATCCCTATGAATCGCTCC 2100 |||||||||| || || || | ||||| || ||| | || ||||||||||| || Sbjct 225 GTACCATCTTTGGTACTGATTGTAACCTGATTGAAGTGATCCACCCCTATGAATCCTACC 166 Query 2101 CCGTCGTTTAAGCAATCTCTC-TCATCCTCTTAATGTTTAAGTTTTATGATGTTTGATTG 2159 |||||| ||||| || |||| | |||| || || ||||||| ||||| || | Sbjct 165 CCGTCGCCTAAGCGATTTCTCAATTTTATCTTTATTTTAAAGTTTT----TGTTTAATCG 110 Query 2160 GCCTCCTTTT-CCGACAAACACGTGTATGCTACGTGttttgttttttttcgttttatttc 2218 | ||||||| ||||| ||||||||||||||||| || |||| ||||| |||||||| Sbjct 109 GTTTCCTTTTGTTGACAATCACGTGTATGCTACGTG-ATTCTTTTGTTTCG-TTTATTTC 52 Query 2219 ctgaactttttattttcagtcttttttaacgttattttctactttaAG 2266 | ||||||| || | ||||||| ||||||||||| |||||| Sbjct 51 C-GAACTTTCCTGTT----TGTTTTTTATCGTTATTTTCT--TTTAAG 11 Score = 113 bits (124), Expect = 6e-22 Identities = 92/108 (85%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 1 AGATTTTTCTAAAGCGCCCCGCCTTTAGTTATTGAGAATTTACATTCGTCTATATTATCA 60 |||||||||| |||||||||| |||| | ||| |||||| ||||||||||| |||||| Sbjct 2272 AGATTTTTCTTAAGCGCCCCGACTTTTGAAATTAAGAATTCACATTCGTCTACGTTATCA 2213 Query 61 AGTC-CTCGAAAAACCTCTGCTCTAA-TTTTAAGATGTCTTCCTCAAC 106 |||| ||| ||| ||| ||||||||| |||||||||||| ||||||| Sbjct 2212 AGTCACTC-AAAGACCCCTGCTCTAACCTTTAAGATGTCTACCTCAAC 2166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7136734277808