Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_030245.1 Length=1536 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 6e-14 seq1 77.0 3e-11 >seq4 Length=146560859 Score = 86.0 bits (94), Expect = 6e-14 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 780 CTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCAATGGAAGGGAA 839 |||| | ||||||||||| ||| |||| || || |||||||| | ||||| || Sbjct 95914704 CTGGTTATTCGACTGGCACGACAATGAAATGTGCTTAGCGTGGTTCCCTTTTGAAGGCAA 95914763 Query 840 TTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAACT 899 | ||| | |||||||| || || || || ||| |||||| |||||| |||| || | Sbjct 95914764 CTACACTACTGATGATGTGACCATAGCCTACATCATTGGAGAGGCCTGTTCTCCAAACAT 95914823 Query 900 CGCCCCATGCGATGTTGATGATTGGCAATACTTTCCCAAC 939 ||| | ||||| || || |||||| |||| |||||| Sbjct 95914824 GGCCTACCGAGATGTGGACGACTGGCAAAACTTCCCCAAC 95914863 Score = 84.2 bits (92), Expect = 2e-13 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 780 CTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCAATGGAAGGGAA 839 |||| | ||||||||||| ||| |||| || || |||||||| | ||||| || Sbjct 95907421 CTGGTTATTCGACTGGCACGACAATGAAATGTGCTTAGCGTGGTTCCCTTTTGAAGGCAA 95907480 Query 840 TTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAACT 899 | ||| |||||||| || || || || ||| |||||| |||||| |||| || || Sbjct 95907481 CTACACTGCTGATGATGTGACCATAGCCTACATCATTGGAGAGGCCTGTTCTCCAAACCT 95907540 Query 900 CGCC--CCATGCGATGTTGATGATTGGCAATACTTTCCCAAC 939 ||| ||| ||||| || || |||||| |||| |||||| Sbjct 95907541 GGCCTACCA--AGATGTGGACGACTGGCAAAACTTCCCCAAC 95907580 >seq1 Length=132393784 Score = 77.0 bits (84), Expect = 3e-11 Identities = 113/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 780 CTGGCTTTTCGACTGGCATGACGATGATCGAGTCTGTGCTTGGTTCCCAATGGAAGGGAA 839 |||| | ||||| ||||| ||| | || || || ||| |||| | ||||| || Sbjct 14662557 CTGGTTATTCGATTGGCACGACAACGAAATGTGCTTAGCGTGGCTCCCTTTTGAAGGTAA 14662498 Query 840 TTTCACAATGGATGATGTCACTATGGCATATATCCTTGGAGTCGCCTGTACTCCTAAACT 899 || ||| ||||||||||| || || || || ||| || ||| | |||| |||| || | Sbjct 14662497 TTACACTATGGATGATGTGACCATAGCCTACATCATTAGAGAGGTCTGTTCTCCAAACAT 14662438 Query 900 CGCCCCATGCGATGTTGATGATTGGCAATACTTTCCCAAC 939 ||| | ||||| ||||| ||||| |||| |||||| Sbjct 14662437 GGCCTACCGAGATGTGGATGACTGGCAGAACTTCCCCAAC 14662398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4805797806144