Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_015494.1 Length=1696 Score E Sequences producing significant alignments: (Bits) Value seq2301 120 3e-24 >seq2301 Length=11085951 Score = 120 bits (132), Expect = 3e-24 Identities = 203/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 634 GCCAGATATTGCTTTCACGCGAACACAGCTAGCGAAGCTACCATCGATTAAAGTTCGGAT 693 ||||||||||| || | | | ||||| ||||| | ||| | | |||||||||| ||| Sbjct 9619576 GCCAGATATTGGATTTATGAGGACACAACTAGCAAGACTAACGTTGATTAAAGTTAGGAA 9619517 Query 694 TGTCTTTGGAGAGGCATTTCACAACATTTTAATTGAGGGACTATCAGCTGCGCCACTCTT 753 ||| ||||| ||||||||||| | |||||||| ||||| ||||| ||| | | Sbjct 9619516 TGTTTTTGGTGAGGCATTTCATTATGGCTTAATTGAAGGACTGTCAGCATACCCAGTTCT 9619457 Query 754 AGAGGCCTTTAAGAGAATGGACACCTTTTACTTTACAGGGAAGGACCCAACAATTTACGT 813 || |||||||| | ||||| |||||| | | ||| || |||||||| || || Sbjct 9619456 TCCGGTCTTTAAGAACTTAGACACTTTTTACCTGATAGGAAAAGACCCAACTTTTGGGGT 9619397 Query 814 TCCAAGAATCTTACACAAGATGAGCACAAACGAAGGATGGTTTATCTGCCTTGACTGGAA 873 |||| ||||| | |||| ||| || |||||||||| ||||| |||| Sbjct 9619396 TCCAGCTATCTTGGATGAGATTAGCCACGACTGTCGATGGTTTATGGTTCTTGATTGGAG 9619337 Query 874 AGCGTTTGACGCTTCAGTTCAATTATGGGAGATTGATCACGCATTCAATTGCAT 927 || || || | ||| ||| |||||||| ||| | |||||| ||| || Sbjct 9619336 CAGATTCGATGCATTAGTGCAACATTGGGAGATCGATGTCACATTCAGTTGTAT 9619283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5318075305032